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  5. GSVIVT01029383001

GSVIVT01029383001


Description : Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.AGO siRNA-integrating factor


Gene families : OG0000124 (Archaeplastida) Phylogenetic Tree(s): OG0000124_tree ,
OG_05_0000677 (LandPlants) Phylogenetic Tree(s): OG_05_0000677_tree ,
OG_06_0000508 (SeedPlants) Phylogenetic Tree(s): OG_06_0000508_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01029383001
Cluster HCCA: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
AT1G48410 AGO1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.07 Archaeplastida
AT5G21150 AGO9 Argonaute family protein 0.03 Archaeplastida
Cpa|evm.model.tig00020961.9 No alias Protein argonaute 18 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
Cre04.g214250 No alias Protein argonaute 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre16.g689647 No alias Protein argonaute 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
LOC_Os02g58490.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.04 Archaeplastida
LOC_Os04g06770.2 No alias siRNA-integrating factor (AGO) 0.03 Archaeplastida
LOC_Os07g16224.1 No alias siRNA-integrating factor (AGO) 0.03 Archaeplastida
MA_118377g0010 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.03 Archaeplastida
Mp1g23190.1 No alias siRNA-integrating factor (AGO) 0.03 Archaeplastida
Pp3c1_35770V3.1 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 Archaeplastida
Pp3c2_4060V3.1 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.03 Archaeplastida
Solyc01g008960.3.1 No alias siRNA-integrating factor (AGO) 0.03 Archaeplastida
Solyc03g098280.4.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.05 Archaeplastida
Solyc12g006790.3.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 Archaeplastida
Zm00001e007233_P001 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 Archaeplastida
Zm00001e029696_P001 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005789 endoplasmic reticulum membrane IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006497 protein lipidation IEP Neighborhood
BP GO:0006505 GPI anchor metabolic process IEP Neighborhood
BP GO:0006506 GPI anchor biosynthetic process IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Neighborhood
BP GO:0006664 glycolipid metabolic process IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008654 phospholipid biosynthetic process IEP Neighborhood
BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0045017 glycerolipid biosynthetic process IEP Neighborhood
BP GO:0046467 membrane lipid biosynthetic process IEP Neighborhood
BP GO:0046474 glycerophospholipid biosynthetic process IEP Neighborhood
BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903509 liposaccharide metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003165 Piwi 684 1003
IPR003100 PAZ_dom 396 522
IPR032473 Argonaute_Mid_dom 590 664
IPR024357 Argonaut_Gly-rich 66 176
IPR032472 ArgoL2 533 579
IPR032474 Argonaute_N 196 331
IPR014811 ArgoL1 341 390
No external refs found!