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Description : RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC18 component
Gene families : OG0001063 (Archaeplastida) Phylogenetic Tree(s): OG0001063_tree ,
OG_05_0006615 (LandPlants) Phylogenetic Tree(s): OG_05_0006615_tree ,
OG_06_0007610 (SeedPlants) Phylogenetic Tree(s): OG_06_0007610_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01030485001 | |
| Cluster | HCCA: Cluster_178 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT2G32180 | PTAC18 | plastid transcriptionally active 18 | 0.04 | Archaeplastida | |
| AT2G32650 | No alias | RmlC-like cupins superfamily protein | 0.06 | Archaeplastida | |
| Pp3c20_2790V3.1 | No alias | plastid transcriptionally active 18 | 0.05 | Archaeplastida | |
| Smo69496 | No alias | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.03 | Archaeplastida | |
| Solyc07g049230.1.1 | No alias | TAC18 cofactor of plastid-encoded RNA polymerase | 0.14 | Archaeplastida | |
| Zm00001e002513_P001 | No alias | TAC18 cofactor of plastid-encoded RNA polymerase | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004640 | phosphoribosylanthranilate isomerase activity | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006353 | DNA-templated transcription, termination | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006457 | protein folding | IEP | Neighborhood |
| BP | GO:0006568 | tryptophan metabolic process | IEP | Neighborhood |
| BP | GO:0006576 | cellular biogenic amine metabolic process | IEP | Neighborhood |
| BP | GO:0006586 | indolalkylamine metabolic process | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0008033 | tRNA processing | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| BP | GO:0009072 | aromatic amino acid family metabolic process | IEP | Neighborhood |
| BP | GO:0009308 | amine metabolic process | IEP | Neighborhood |
| BP | GO:0009987 | cellular process | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| MF | GO:0016860 | intramolecular oxidoreductase activity | IEP | Neighborhood |
| MF | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses | IEP | Neighborhood |
| BP | GO:0032259 | methylation | IEP | Neighborhood |
| BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0042430 | indole-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0044106 | cellular amine metabolic process | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| MF | GO:0051082 | unfolded protein binding | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR008579 | DUF861_Cupin_3 | 60 | 132 |
| No external refs found! |