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  5. GSVIVT01031001001

GSVIVT01031001001


Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.CRS1 splicing factor


Gene families : OG0000748 (Archaeplastida) Phylogenetic Tree(s): OG0000748_tree ,
OG_05_0011370 (LandPlants) Phylogenetic Tree(s): OG_05_0011370_tree ,
OG_06_0011406 (SeedPlants) Phylogenetic Tree(s): OG_06_0011406_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01031001001
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00265220 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.07 Archaeplastida
AMTR_s00028p00245370 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.08 Archaeplastida
AMTR_s00079p00107040 evm_27.TU.AmTr_v1... CRM-domain containing factor CFM3,... 0.03 Archaeplastida
AT3G01370 ATCFM2, CFM2 CRM family member 2 0.15 Archaeplastida
AT3G18390 EMB1865 CRS1 / YhbY (CRM) domain-containing protein 0.12 Archaeplastida
AT3G23070 ATCFM3A, CFM3A CRM family member 3A 0.08 Archaeplastida
AT4G14510 ATCFM3B, CFM3B CRM family member 3B 0.03 Archaeplastida
AT4G29750 No alias CRS1 / YhbY (CRM) domain-containing protein 0.05 Archaeplastida
Cre14.g630301 No alias No description available 0.03 Archaeplastida
Gb_18301 No alias CRM-domain containing factor CFM2, chloroplastic... 0.03 Archaeplastida
Gb_18303 No alias CRM-domain containing factor CFM2, chloroplastic... 0.04 Archaeplastida
Gb_37638 No alias CFM2-type plastidial RNA splicing factor. CFM3-type... 0.08 Archaeplastida
Gb_39217 No alias CFM2-type plastidial RNA splicing factor 0.03 Archaeplastida
LOC_Os04g39060.2 No alias CRM-domain containing factor CFM2, chloroplastic... 0.11 Archaeplastida
LOC_Os05g47850.1 No alias CRM-domain containing factor CFM3,... 0.05 Archaeplastida
LOC_Os08g27150.1 No alias CRS1 plastidial RNA splicing factor 0.05 Archaeplastida
LOC_Os09g19850.1 No alias CRM-domain containing factor CFM3,... 0.07 Archaeplastida
LOC_Os11g37990.1 No alias CFM3-type plastidial RNA splicing factor 0.06 Archaeplastida
MA_10432072g0010 No alias CFM2-type plastidial RNA splicing factor 0.1 Archaeplastida
MA_10435740g0010 No alias CFM2-type plastidial RNA splicing factor 0.06 Archaeplastida
MA_130902g0010 No alias CRM-domain containing factor CFM2, chloroplastic... 0.03 Archaeplastida
Mp3g06280.1 No alias CRM-domain containing factor CFM3,... 0.06 Archaeplastida
Pp3c13_17270V3.1 No alias CRM family member 2 0.08 Archaeplastida
Pp3c7_23880V3.1 No alias CRM family member 2 0.03 Archaeplastida
Smo120007 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
Smo20706 No alias CRM-domain containing factor CFM3,... 0.03 Archaeplastida
Smo412905 No alias CRM-domain containing factor CFM3,... 0.05 Archaeplastida
Solyc03g119450.3.1 No alias CRM-domain containing factor CFM3,... 0.11 Archaeplastida
Solyc07g039500.4.1 No alias CRM-domain containing factor CFM3,... 0.11 Archaeplastida
Solyc09g083350.3.1 No alias CFM3-type plastidial RNA splicing factor 0.03 Archaeplastida
Zm00001e004284_P002 No alias CRS1 plastidial RNA splicing factor 0.05 Archaeplastida
Zm00001e032339_P002 No alias CRM-domain containing factor CFM3,... 0.06 Archaeplastida
Zm00001e033939_P001 No alias CRM-domain containing factor CFM3,... 0.07 Archaeplastida
Zm00001e041033_P001 No alias CFM2-type plastidial RNA splicing factor 0.04 Archaeplastida
Zm00001e041034_P001 No alias CFM2-type plastidial RNA splicing factor 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004645 phosphorylase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
BP GO:0006771 riboflavin metabolic process IEP Neighborhood
MF GO:0008184 glycogen phosphorylase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009231 riboflavin biosynthetic process IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
BP GO:0042726 flavin-containing compound metabolic process IEP Neighborhood
BP GO:0042727 flavin-containing compound biosynthetic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0070569 uridylyltransferase activity IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 123 207
IPR001890 RNA-binding_CRM 336 423
No external refs found!