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  5. GSVIVT01031308001

GSVIVT01031308001


Description : Chromatin organisation.histone chaperone activities.FACT histone chaperone complex.SPT16 component


Gene families : OG0003828 (Archaeplastida) Phylogenetic Tree(s): OG0003828_tree ,
OG_05_0004100 (LandPlants) Phylogenetic Tree(s): OG_05_0004100_tree ,
OG_06_0003905 (SeedPlants) Phylogenetic Tree(s): OG_06_0003905_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01031308001
Cluster HCCA: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
Gb_09795 No alias component SPT16 of FACT histone chaperone complex 0.02 Archaeplastida
Solyc01g101030.4.1 No alias component SPT16 of FACT histone chaperone complex 0.03 Archaeplastida
Solyc10g006770.4.1 No alias component SPT16 of FACT histone chaperone complex 0.03 Archaeplastida
Zm00001e013464_P001 No alias component SPT16 of FACT histone chaperone complex 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR029148 FACT-Spt16_Nlobe 25 129
IPR013953 FACT_Spt16p 438 592
IPR000994 Pept_M24 145 317
IPR013719 DUF1747 696 763
No external refs found!