1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01031557001

GSVIVT01031557001


Description : Pumilio homolog 5 OS=Arabidopsis thaliana


Gene families : OG0000536 (Archaeplastida) Phylogenetic Tree(s): OG0000536_tree ,
OG_05_0000342 (LandPlants) Phylogenetic Tree(s): OG_05_0000342_tree ,
OG_06_0004029 (SeedPlants) Phylogenetic Tree(s): OG_06_0004029_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01031557001
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
Gb_28529 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Gb_31285 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_10159883g0010 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10434828g0010 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_9025256g0010 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Pp3c3_36960V3.1 No alias pumilio 1 0.04 Archaeplastida
Pp3c8_2770V3.1 No alias pumilio 1 0.04 Archaeplastida
Smo1983 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
Smo86145 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc06g076340.3.1 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e021916_P002 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e027653_P001 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 953 983
IPR001313 Pumilio_RNA-bd_rpt 765 795
IPR001313 Pumilio_RNA-bd_rpt 801 832
IPR001313 Pumilio_RNA-bd_rpt 907 940
IPR001313 Pumilio_RNA-bd_rpt 691 720
IPR001313 Pumilio_RNA-bd_rpt 727 758
IPR001313 Pumilio_RNA-bd_rpt 871 905
IPR001313 Pumilio_RNA-bd_rpt 837 866
IPR012940 NABP 336 689
No external refs found!