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  5. GSVIVT01032041001

GSVIVT01032041001


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL6 component


Gene families : OG0002580 (Archaeplastida) Phylogenetic Tree(s): OG0002580_tree ,
OG_05_0002755 (LandPlants) Phylogenetic Tree(s): OG_05_0002755_tree ,
OG_06_0003200 (SeedPlants) Phylogenetic Tree(s): OG_06_0003200_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032041001
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00218700 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
AT1G18540 No alias Ribosomal protein L6 family protein 0.17 Archaeplastida
AT1G74050 No alias Ribosomal protein L6 family protein 0.13 Archaeplastida
AT1G74060 No alias Ribosomal protein L6 family protein 0.07 Archaeplastida
Cpa|evm.model.tig00021127.127 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
Cre01.g011000 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 Archaeplastida
Gb_01604 No alias component RPL6 of LSU proteome component 0.09 Archaeplastida
LOC_Os02g37862.1 No alias component RPL6 of LSU proteome component 0.19 Archaeplastida
LOC_Os04g39700.1 No alias component RPL6 of LSU proteome component 0.17 Archaeplastida
MA_108607g0010 No alias component RPL6 of LSU proteome component 0.15 Archaeplastida
Mp3g11670.1 No alias component RPL6 of LSU proteome component 0.17 Archaeplastida
Pp3c14_4100V3.1 No alias Ribosomal protein L6 family protein 0.09 Archaeplastida
Pp3c14_4160V3.1 No alias Ribosomal protein L6 family protein 0.14 Archaeplastida
Pp3c1_24300V3.1 No alias Ribosomal protein L6 family protein 0.08 Archaeplastida
Pp3c2_13300V3.1 No alias Ribosomal protein L6 family protein 0.08 Archaeplastida
Smo270686 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
Solyc04g014720.4.1 No alias component RPL6 of LSU proteome component 0.04 Archaeplastida
Solyc05g054070.4.1 No alias component RPL6 of LSU proteome component 0.08 Archaeplastida
Solyc11g012110.2.1 No alias component RPL6 of LSU proteome component 0.17 Archaeplastida
Zm00001e014979_P001 No alias component RPL6 of LSU proteome component 0.16 Archaeplastida
Zm00001e022840_P001 No alias component RPL6 of LSU proteome component 0.13 Archaeplastida
Zm00001e022841_P001 No alias component RPL6 of LSU proteome component 0.14 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004797 thymidine kinase activity IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Neighborhood
MF GO:0019136 deoxynucleoside kinase activity IEP Neighborhood
MF GO:0019205 nucleobase-containing compound kinase activity IEP Neighborhood
MF GO:0019206 nucleoside kinase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
InterPro domains Description Start Stop
IPR000915 60S_ribosomal_L6E 99 206
No external refs found!