GSVIVT01032193001

Description : RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor

Gene families : OG0000365 (Archaeplastida) Phylogenetic Tree(s): OG0000365_tree ,
OG_05_0017242 (LandPlants) Phylogenetic Tree(s): OG_05_0017242_tree ,
OG_06_0016741 (SeedPlants) Phylogenetic Tree(s): OG_06_0016741_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01032193001
Cluster	HCCA: Cluster_176

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00072720	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s00011p00266100	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.05	Archaeplastida
AMTR_s00025p00248060	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.09	Archaeplastida
AMTR_s00056p00209700	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.08	Archaeplastida
AT1G08540	ATSIG1, SIGB,...	RNApolymerase sigma subunit 2	0.06	Archaeplastida
AT2G36990	SIGF, SIG6,...	RNApolymerase sigma-subunit F	0.07	Archaeplastida
AT5G13730	SIGD, SIG4	sigma factor 4	0.05	Archaeplastida
Gb_03878	No alias	basal transcription factor (Sigma)	0.03	Archaeplastida
Gb_37602	No alias	basal transcription factor (Sigma)	0.03	Archaeplastida
LOC_Os03g16430.1	No alias	basal transcription factor (Sigma)	0.08	Archaeplastida
LOC_Os05g50930.1	No alias	basal transcription factor (Sigma)	0.05	Archaeplastida
LOC_Os05g51150.1	No alias	basal transcription factor (Sigma)	0.07	Archaeplastida
LOC_Os08g06630.1	No alias	basal transcription factor (Sigma)	0.06	Archaeplastida
LOC_Os08g14450.1	No alias	basal transcription factor (Sigma)	0.04	Archaeplastida
MA_137876g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
Mp4g13380.1	No alias	basal transcription factor (Sigma)	0.02	Archaeplastida
Mp7g15030.1	No alias	basal transcription factor (Sigma)	0.03	Archaeplastida
Pp3c14_4440V3.1	No alias	sigma factor A	0.02	Archaeplastida
Pp3c1_36580V3.1	No alias	RNApolymerase sigma subunit 2	0.03	Archaeplastida
Pp3c2_5110V3.1	No alias	RNApolymerase sigma subunit 2	0.01	Archaeplastida
Solyc01g081490.3.1	No alias	basal transcription factor (Sigma)	0.06	Archaeplastida
Solyc03g097320.3.1	No alias	basal transcription factor (Sigma)	0.06	Archaeplastida
Solyc09g008040.3.1	No alias	basal transcription factor (Sigma)	0.06	Archaeplastida
Zm00001e001198_P005	No alias	basal transcription factor (Sigma)	0.06	Archaeplastida
Zm00001e011616_P008	No alias	basal transcription factor (Sigma)	0.03	Archaeplastida
Zm00001e021420_P001	No alias	basal transcription factor (Sigma)	0.04	Archaeplastida
Zm00001e021683_P001	No alias	basal transcription factor (Sigma)	0.04	Archaeplastida
Zm00001e032586_P001	No alias	basal transcription factor (Sigma)	0.06	Archaeplastida
Zm00001e040174_P003	No alias	no hits & (original description: none)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription, initiation	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004045	aminoacyl-tRNA hydrolase activity	IEP	Neighborhood
MF	GO:0004332	fructose-bisphosphate aldolase activity	IEP	Neighborhood
MF	GO:0005509	calcium ion binding	IEP	Neighborhood
CC	GO:0005886	plasma membrane	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0006553	lysine metabolic process	IEP	Neighborhood
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006787	porphyrin-containing compound catabolic process	IEP	Neighborhood
BP	GO:0006835	dicarboxylic acid transport	IEP	Neighborhood
MF	GO:0008565	protein transporter activity	IEP	Neighborhood
MF	GO:0008839	4-hydroxy-tetrahydrodipicolinate reductase	IEP	Neighborhood
BP	GO:0009056	catabolic process	IEP	Neighborhood
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Neighborhood
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009085	lysine biosynthetic process	IEP	Neighborhood
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	IEP	Neighborhood
CC	GO:0009521	photosystem	IEP	Neighborhood
CC	GO:0009523	photosystem II	IEP	Neighborhood
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Neighborhood
BP	GO:0015740	C4-dicarboxylate transport	IEP	Neighborhood
BP	GO:0015743	malate transport	IEP	Neighborhood
BP	GO:0015979	photosynthesis	IEP	Neighborhood
BP	GO:0015994	chlorophyll metabolic process	IEP	Neighborhood
BP	GO:0015996	chlorophyll catabolic process	IEP	Neighborhood
BP	GO:0016053	organic acid biosynthetic process	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Neighborhood
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Neighborhood
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Neighborhood
MF	GO:0016832	aldehyde-lyase activity	IEP	Neighborhood
BP	GO:0017004	cytochrome complex assembly	IEP	Neighborhood
BP	GO:0019439	aromatic compound catabolic process	IEP	Neighborhood
CC	GO:0019898	extrinsic component of membrane	IEP	Neighborhood
MF	GO:0032977	membrane insertase activity	IEP	Neighborhood
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Neighborhood
BP	GO:0033015	tetrapyrrole catabolic process	IEP	Neighborhood
BP	GO:0042440	pigment metabolic process	IEP	Neighborhood
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0044248	cellular catabolic process	IEP	Neighborhood
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Neighborhood
BP	GO:0044283	small molecule biosynthetic process	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
CC	GO:0044436	thylakoid part	IEP	Neighborhood
BP	GO:0046149	pigment catabolic process	IEP	Neighborhood
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Neighborhood
BP	GO:0046451	diaminopimelate metabolic process	IEP	Neighborhood
BP	GO:0046700	heterocycle catabolic process	IEP	Neighborhood
MF	GO:0047746	chlorophyllase activity	IEP	Neighborhood
BP	GO:0051186	cofactor metabolic process	IEP	Neighborhood
BP	GO:0051187	cofactor catabolic process	IEP	Neighborhood
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
CC	GO:0098796	membrane protein complex	IEP	Neighborhood
BP	GO:1901361	organic cyclic compound catabolic process	IEP	Neighborhood
BP	GO:1901575	organic substance catabolic process	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
CC	GO:1990204	oxidoreductase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007624	RNA_pol_sigma70_r3	167	241
IPR007630	RNA_pol_sigma70_r4	254	307
IPR007627	RNA_pol_sigma70_r2	88	155

External Links

No external refs found!

GSVIVT01032193001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation