GSVIVT01033179001


Description : COP1-interactive protein 1 OS=Arabidopsis thaliana


Gene families : OG0002800 (Archaeplastida) Phylogenetic Tree(s): OG0002800_tree ,
OG_05_0001972 (LandPlants) Phylogenetic Tree(s): OG_05_0001972_tree ,
OG_06_0001718 (SeedPlants) Phylogenetic Tree(s): OG_06_0001718_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033179001
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00254550 evm_27.TU.AmTr_v1... COP1-interactive protein 1 OS=Arabidopsis thaliana 0.1 Archaeplastida
AMTR_s00049p00185400 No alias Vesicle trafficking.SNARE target membrane recognition... 0.08 Archaeplastida
AT1G24460 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.1 Archaeplastida
AT4G31570 No alias CONTAINS InterPro DOMAIN/s: Prefoldin... 0.22 Archaeplastida
Gb_07542 No alias COP1-interactive protein 1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Gb_40009 No alias TNO1 vesicle trafficking tethering factor 0.06 Archaeplastida
LOC_Os02g05490.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os02g38480.1 No alias TNO1 vesicle trafficking tethering factor 0.05 Archaeplastida
MA_10430492g0030 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10431592g0010 No alias no hits & (original description: none) 0.11 Archaeplastida
MA_156987g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_167448g0020 No alias no hits & (original description: none) 0.1 Archaeplastida
MA_4333439g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
Mp4g21920.1 No alias no hits & (original description: none) 0.11 Archaeplastida
Pp3c4_12010V3.1 No alias No annotation 0.06 Archaeplastida
Solyc05g014200.3.1 No alias TNO1 vesicle trafficking tethering factor 0.05 Archaeplastida
Solyc08g006420.3.1 No alias no hits & (original description: none) 0.08 Archaeplastida
Zm00001e013662_P003 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e015026_P001 No alias TNO1 vesicle trafficking tethering factor 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!