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  5. GSVIVT01033179001

GSVIVT01033179001


Description : COP1-interactive protein 1 OS=Arabidopsis thaliana


Gene families : OG0002800 (Archaeplastida) Phylogenetic Tree(s): OG0002800_tree ,
OG_05_0001972 (LandPlants) Phylogenetic Tree(s): OG_05_0001972_tree ,
OG_06_0001718 (SeedPlants) Phylogenetic Tree(s): OG_06_0001718_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033179001
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00254550 evm_27.TU.AmTr_v1... COP1-interactive protein 1 OS=Arabidopsis thaliana 0.1 Archaeplastida
AMTR_s00049p00185400 No alias Vesicle trafficking.SNARE target membrane recognition... 0.08 Archaeplastida
AT1G24460 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.1 Archaeplastida
AT4G31570 No alias CONTAINS InterPro DOMAIN/s: Prefoldin... 0.22 Archaeplastida
Gb_07542 No alias COP1-interactive protein 1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Gb_40009 No alias TNO1 vesicle trafficking tethering factor 0.06 Archaeplastida
LOC_Os02g05490.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os02g38480.1 No alias TNO1 vesicle trafficking tethering factor 0.05 Archaeplastida
MA_10430492g0030 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10431592g0010 No alias no hits & (original description: none) 0.11 Archaeplastida
MA_156987g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_167448g0020 No alias no hits & (original description: none) 0.1 Archaeplastida
MA_4333439g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
Mp4g21920.1 No alias no hits & (original description: none) 0.11 Archaeplastida
Pp3c4_12010V3.1 No alias No annotation 0.06 Archaeplastida
Solyc05g014200.3.1 No alias TNO1 vesicle trafficking tethering factor 0.05 Archaeplastida
Solyc08g006420.3.1 No alias no hits & (original description: none) 0.08 Archaeplastida
Zm00001e013662_P003 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e015026_P001 No alias TNO1 vesicle trafficking tethering factor 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!