GSVIVT01033444001

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL21 component

Gene families : OG0001742 (Archaeplastida) Phylogenetic Tree(s): OG0001742_tree ,
OG_05_0002541 (LandPlants) Phylogenetic Tree(s): OG_05_0002541_tree ,
OG_06_0002619 (SeedPlants) Phylogenetic Tree(s): OG_06_0002619_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01033444001
Cluster	HCCA: Cluster_172

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00252940	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	Archaeplastida
AMTR_s00024p00178920	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.14	Archaeplastida
AT1G09590	No alias	Translation protein SH3-like family protein	0.17	Archaeplastida
AT1G09690	No alias	Translation protein SH3-like family protein	0.14	Archaeplastida
AT1G57660	No alias	Translation protein SH3-like family protein	0.04	Archaeplastida
Cpa\|evm.model.tig00000640.5	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.13	Archaeplastida
Cre06.g278135	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.18	Archaeplastida
GSVIVT01033455001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	Archaeplastida
Gb_09077	No alias	component RPL21 of LSU proteome component	0.08	Archaeplastida
LOC_Os03g04750.1	No alias	component RPL21 of LSU proteome component	0.15	Archaeplastida
LOC_Os10g32820.1	No alias	component RPL21 of LSU proteome component	0.1	Archaeplastida
MA_186351g0010	No alias	component RPL21 of LSU proteome component	0.03	Archaeplastida
MA_40819g0010	No alias	component RPL21 of LSU proteome component	0.04	Archaeplastida
Mp6g01390.1	No alias	component RPL21 of LSU proteome component	0.2	Archaeplastida
Pp3c12_9320V3.1	No alias	Translation protein SH3-like family protein	0.19	Archaeplastida
Pp3c13_2360V3.1	No alias	Translation protein SH3-like family protein	0.1	Archaeplastida
Pp3c3_5550V3.1	No alias	Translation protein SH3-like family protein	0.21	Archaeplastida
Pp3c4_21520V3.1	No alias	Translation protein SH3-like family protein	0.18	Archaeplastida
Smo170832	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	Archaeplastida
Solyc10g078960.2.1	No alias	component RPL21 of LSU proteome component	0.18	Archaeplastida
Solyc10g080590.2.1	No alias	component RPL21 of LSU proteome component	0.18	Archaeplastida
Zm00001e000341_P001	No alias	component RPL21 of LSU proteome component	0.24	Archaeplastida
Zm00001e004623_P001	No alias	component RPL21 of LSU proteome component	0.14	Archaeplastida
Zm00001e012727_P001	No alias	component RPL21 of LSU proteome component	0.19	Archaeplastida
Zm00001e038963_P001	No alias	component RPL21 of LSU proteome component	0.25	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
CC	GO:0005730	nucleolus	IEP	Neighborhood
CC	GO:0005741	mitochondrial outer membrane	IEP	Neighborhood
CC	GO:0005759	mitochondrial matrix	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
CC	GO:0019867	outer membrane	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
CC	GO:0031090	organelle membrane	IEP	Neighborhood
CC	GO:0031966	mitochondrial membrane	IEP	Neighborhood
CC	GO:0031968	organelle outer membrane	IEP	Neighborhood
CC	GO:0031974	membrane-enclosed lumen	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
CC	GO:0043233	organelle lumen	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044429	mitochondrial part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0070013	intracellular organelle lumen	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
CC	GO:0098588	bounding membrane of organelle	IEP	Neighborhood
CC	GO:0098805	whole membrane	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001147	Ribosomal_L21e	1	101

External Links

No external refs found!

GSVIVT01033444001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation