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  5. GSVIVT01033455001

GSVIVT01033455001


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL21 component


Gene families : OG0001742 (Archaeplastida) Phylogenetic Tree(s): OG0001742_tree ,
OG_05_0002541 (LandPlants) Phylogenetic Tree(s): OG_05_0002541_tree ,
OG_06_0002619 (SeedPlants) Phylogenetic Tree(s): OG_06_0002619_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033455001
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00252940 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
AMTR_s00024p00178920 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 Archaeplastida
AT1G09590 No alias Translation protein SH3-like family protein 0.25 Archaeplastida
AT1G09690 No alias Translation protein SH3-like family protein 0.24 Archaeplastida
AT1G57660 No alias Translation protein SH3-like family protein 0.14 Archaeplastida
Cpa|evm.model.tig00000640.5 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 Archaeplastida
Cre06.g278135 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.35 Archaeplastida
GSVIVT01033444001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
Gb_09077 No alias component RPL21 of LSU proteome component 0.05 Archaeplastida
LOC_Os03g04750.1 No alias component RPL21 of LSU proteome component 0.21 Archaeplastida
LOC_Os10g32820.1 No alias component RPL21 of LSU proteome component 0.12 Archaeplastida
MA_186351g0010 No alias component RPL21 of LSU proteome component 0.09 Archaeplastida
Mp6g01390.1 No alias component RPL21 of LSU proteome component 0.25 Archaeplastida
Pp3c12_9320V3.1 No alias Translation protein SH3-like family protein 0.21 Archaeplastida
Pp3c13_2360V3.1 No alias Translation protein SH3-like family protein 0.22 Archaeplastida
Pp3c3_5550V3.1 No alias Translation protein SH3-like family protein 0.27 Archaeplastida
Pp3c4_21520V3.1 No alias Translation protein SH3-like family protein 0.21 Archaeplastida
Smo170832 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 Archaeplastida
Solyc10g078960.2.1 No alias component RPL21 of LSU proteome component 0.23 Archaeplastida
Solyc10g080590.2.1 No alias component RPL21 of LSU proteome component 0.18 Archaeplastida
Zm00001e000341_P001 No alias component RPL21 of LSU proteome component 0.17 Archaeplastida
Zm00001e004623_P001 No alias component RPL21 of LSU proteome component 0.11 Archaeplastida
Zm00001e012727_P001 No alias component RPL21 of LSU proteome component 0.17 Archaeplastida
Zm00001e038963_P001 No alias component RPL21 of LSU proteome component 0.22 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004150 dihydroneopterin aldolase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005787 signal peptidase complex IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
BP GO:0006575 cellular modified amino acid metabolic process IEP Neighborhood
BP GO:0006760 folic acid-containing compound metabolic process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016832 aldehyde-lyase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0042558 pteridine-containing compound metabolic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001147 Ribosomal_L21e 1 101
No external refs found!