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  5. GSVIVT01033511001

GSVIVT01033511001


Description : Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 OS=Arabidopsis thaliana


Gene families : OG0003737 (Archaeplastida) Phylogenetic Tree(s): OG0003737_tree ,
OG_05_0003730 (LandPlants) Phylogenetic Tree(s): OG_05_0003730_tree ,
OG_06_0003392 (SeedPlants) Phylogenetic Tree(s): OG_06_0003392_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033511001
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00085p00089520 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.09 Archaeplastida
AT3G12810 SRCAP, PIE1, chr13 SNF2 domain-containing protein / helicase... 0.15 Archaeplastida
Cpa|evm.model.tig00000194.25 No alias Chromatin organisation.chromatin remodeling... 0.01 Archaeplastida
Cpa|evm.model.tig00000194.26 No alias Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1... 0.06 Archaeplastida
Cre14.g618860 No alias Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
Gb_04358 No alias ATPase component PIE1 of SWR1 chromatin remodeling complex 0.04 Archaeplastida
Gb_30810 No alias ATPase component PIE1 of SWR1 chromatin remodeling complex 0.03 Archaeplastida
LOC_Os02g46450.2 No alias ATPase component PIE1 of SWR1 chromatin remodeling complex 0.12 Archaeplastida
MA_424432g0010 No alias ATPase component PIE1 of SWR1 chromatin remodeling complex 0.11 Archaeplastida
Mp7g15670.1 No alias ATPase component PIE1 of SWR1 chromatin remodeling complex 0.06 Archaeplastida
Pp3c10_13800V3.1 No alias SNF2 domain-containing protein / helicase... 0.11 Archaeplastida
Pp3c3_30220V3.1 No alias SNF2 domain-containing protein / helicase... 0.04 Archaeplastida
Solyc03g063220.2.1 No alias ATPase component PIE1 of SWR1 chromatin remodeling complex 0.17 Archaeplastida
Zm00001e015483_P001 No alias ATPase component PIE1 of SWR1 chromatin remodeling complex 0.16 Archaeplastida
Zm00001e023267_P001 No alias ATPase component PIE1 of SWR1 chromatin remodeling complex 0.21 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
CC GO:0070461 SAGA-type complex IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 810 884
IPR014012 HSA_dom 27 93
IPR000330 SNF2_N 621 686
IPR000330 SNF2_N 534 617
No external refs found!