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  5. GSVIVT01033711001

GSVIVT01033711001


Description : RNA biosynthesis.transcriptional activation.PHD finger transcription factor


Gene families : OG0000311 (Archaeplastida) Phylogenetic Tree(s): OG0000311_tree ,
OG_05_0001728 (LandPlants) Phylogenetic Tree(s): OG_05_0001728_tree ,
OG_06_0001860 (SeedPlants) Phylogenetic Tree(s): OG_06_0001860_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033711001
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00050160 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PHD finger... 0.02 Archaeplastida
AMTR_s00146p00080830 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PHD finger... 0.03 Archaeplastida
AT2G27980 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.04 Archaeplastida
AT2G36720 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.03 Archaeplastida
AT5G36740 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.03 Archaeplastida
Cre01.g018200 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.03 Archaeplastida
Cre12.g516150 No alias No description available 0.02 Archaeplastida
Cre16.g694208 No alias No description available 0.01 Archaeplastida
GSVIVT01016041001 No alias Heat shock cognate protein 80 OS=Solanum lycopersicum 0.01 Archaeplastida
Gb_06644 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.03 Archaeplastida
Gb_41487 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os06g01170.1 No alias PHD finger transcription factor 0.04 Archaeplastida
LOC_Os07g07690.1 No alias PHD finger transcription factor 0.03 Archaeplastida
MA_14500g0010 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.03 Archaeplastida
MA_3931g0010 No alias PHD finger transcription factor 0.02 Archaeplastida
Mp2g04330.1 No alias PHD finger transcription factor 0.03 Archaeplastida
Mp6g21090.2 No alias PHD finger transcription factor 0.04 Archaeplastida
Pp3c14_7890V3.1 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.04 Archaeplastida
Pp3c25_4970V3.1 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.03 Archaeplastida
Pp3c25_9550V3.1 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.03 Archaeplastida
Solyc09g008520.4.1 No alias PHD finger transcription factor 0.02 Archaeplastida
Solyc09g065340.3.1 No alias PHD finger transcription factor 0.03 Archaeplastida
Solyc09g076010.3.1 No alias PHD finger transcription factor 0.03 Archaeplastida
Solyc10g083800.2.1 No alias PHD finger transcription factor 0.07 Archaeplastida
Solyc10g084650.3.1 No alias PHD finger transcription factor 0.02 Archaeplastida
Solyc11g066480.2.1 No alias PHD finger transcription factor 0.05 Archaeplastida
Zm00001e005667_P001 No alias PHD finger transcription factor 0.06 Archaeplastida
Zm00001e012046_P003 No alias PHD finger transcription factor 0.03 Archaeplastida
Zm00001e013368_P001 No alias PHD finger transcription factor 0.04 Archaeplastida
Zm00001e032904_P002 No alias PHD finger transcription factor 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007064 mitotic sister chromatid cohesion IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
CC GO:0031390 Ctf18 RFC-like complex IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR032308 Jas 415 486
IPR032308 Jas 251 313
IPR019787 Znf_PHD-finger 515 556
No external refs found!