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Description : Ribosome production factor 2 homolog OS=Arabidopsis thaliana
Gene families : OG0005305 (Archaeplastida) Phylogenetic Tree(s): OG0005305_tree ,
OG_05_0005942 (LandPlants) Phylogenetic Tree(s): OG_05_0005942_tree ,
OG_06_0006441 (SeedPlants) Phylogenetic Tree(s): OG_06_0006441_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01033782001 | |
| Cluster | HCCA: Cluster_172 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G23620 | No alias | Ribosomal RNA processing Brix domain protein | 0.1 | Archaeplastida | |
| Cpa|evm.model.tig00001003.36 | No alias | Ribosome production factor 2 homolog OS=Arabidopsis thaliana | 0.02 | Archaeplastida | |
| Cre03.g197000 | No alias | Ribosome production factor 2 homolog OS=Arabidopsis thaliana | 0.09 | Archaeplastida | |
| Gb_27395 | No alias | component ARPF2 of ARPF2-ARRS1 complex | 0.1 | Archaeplastida | |
| LOC_Os01g33030.1 | No alias | component ARPF2 of ARPF2-ARRS1 complex | 0.11 | Archaeplastida | |
| MA_89741g0010 | No alias | component ARPF2 of ARPF2-ARRS1 complex | 0.04 | Archaeplastida | |
| Mp4g01500.1 | No alias | component ARPF2 of ARPF2-ARRS1 complex | 0.05 | Archaeplastida | |
| Pp3c4_19370V3.1 | No alias | Ribosomal RNA processing Brix domain protein | 0.06 | Archaeplastida | |
| Smo73689 | No alias | Ribosome production factor 2 homolog OS=Oryza sativa... | 0.04 | Archaeplastida | |
| Solyc10g083600.2.1 | No alias | component ARPF2 of ARPF2-ARRS1 complex | 0.12 | Archaeplastida | |
| Zm00001e015921_P002 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| Zm00001e032080_P001 | No alias | component ARPF2 of ARPF2-ARRS1 complex | 0.07 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000049 | tRNA binding | IEP | Neighborhood |
| MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003697 | single-stranded DNA binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003724 | RNA helicase activity | IEP | Neighborhood |
| MF | GO:0004004 | ATP-dependent RNA helicase activity | IEP | Neighborhood |
| MF | GO:0004386 | helicase activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005524 | ATP binding | IEP | Neighborhood |
| CC | GO:0005575 | cellular_component | IEP | Neighborhood |
| CC | GO:0005622 | intracellular | IEP | Neighborhood |
| CC | GO:0005730 | nucleolus | IEP | Neighborhood |
| CC | GO:0005759 | mitochondrial matrix | IEP | Neighborhood |
| BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
| MF | GO:0008026 | ATP-dependent helicase activity | IEP | Neighborhood |
| MF | GO:0008144 | drug binding | IEP | Neighborhood |
| MF | GO:0008186 | RNA-dependent ATPase activity | IEP | Neighborhood |
| BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
| MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
| MF | GO:0019843 | rRNA binding | IEP | Neighborhood |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
| CC | GO:0031974 | membrane-enclosed lumen | IEP | Neighborhood |
| MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
| MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
| BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
| MF | GO:0043168 | anion binding | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043233 | organelle lumen | IEP | Neighborhood |
| BP | GO:0044085 | cellular component biogenesis | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044444 | cytoplasmic part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| CC | GO:0070013 | intracellular organelle lumen | IEP | Neighborhood |
| MF | GO:0070035 | purine NTP-dependent helicase activity | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007109 | Brix | 35 | 231 |
| No external refs found! |