GSVIVT01033920001

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS17 component

Gene families : OG0002265 (Archaeplastida) Phylogenetic Tree(s): OG0002265_tree ,
OG_05_0002018 (LandPlants) Phylogenetic Tree(s): OG_05_0002018_tree ,
OG_06_0002044 (SeedPlants) Phylogenetic Tree(s): OG_06_0002044_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01033920001
Cluster	HCCA: Cluster_172

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00030p00243530	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	Archaeplastida
AT2G04390	No alias	Ribosomal S17 family protein	0.05	Archaeplastida
AT2G05220	No alias	Ribosomal S17 family protein	0.1	Archaeplastida
AT3G10610	No alias	Ribosomal S17 family protein	0.08	Archaeplastida
AT5G04800	No alias	Ribosomal S17 family protein	0.08	Archaeplastida
Cre12.g498250	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	Archaeplastida
GSVIVT01034653001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	Archaeplastida
LOC_Os03g01900.1	No alias	component RPS17 of SSU proteome	0.11	Archaeplastida
MA_184894g0010	No alias	component RPS17 of SSU proteome	0.06	Archaeplastida
Mp8g18950.1	No alias	component RPS17 of SSU proteome	0.08	Archaeplastida
Pp3c11_2530V3.1	No alias	Ribosomal S17 family protein	0.15	Archaeplastida
Pp3c11_2540V3.1	No alias	Ribosomal S17 family protein	0.1	Archaeplastida
Pp3c2_34780V3.1	No alias	Ribosomal S17 family protein	0.09	Archaeplastida
Pp3c7_21070V3.1	No alias	Ribosomal S17 family protein	0.04	Archaeplastida
Pp3c7_21140V3.1	No alias	Ribosomal S17 family protein	0.15	Archaeplastida
Smo270936	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	Archaeplastida
Solyc05g055230.2.1	No alias	component RPS17 of SSU proteome	0.1	Archaeplastida
Solyc10g150146.1.1	No alias	component RPS17 of SSU proteome	0.08	Archaeplastida
Solyc11g006690.1.1	No alias	component RPS17 of SSU proteome	0.08	Archaeplastida
Zm00001e030769_P001	No alias	component RPS17 of SSU proteome	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
CC	GO:0005730	nucleolus	IEP	Neighborhood
CC	GO:0005741	mitochondrial outer membrane	IEP	Neighborhood
CC	GO:0005759	mitochondrial matrix	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
CC	GO:0019867	outer membrane	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
CC	GO:0031090	organelle membrane	IEP	Neighborhood
CC	GO:0031966	mitochondrial membrane	IEP	Neighborhood
CC	GO:0031968	organelle outer membrane	IEP	Neighborhood
CC	GO:0031974	membrane-enclosed lumen	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
CC	GO:0043233	organelle lumen	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044429	mitochondrial part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0070013	intracellular organelle lumen	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
CC	GO:0098588	bounding membrane of organelle	IEP	Neighborhood
CC	GO:0098805	whole membrane	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001210	Ribosomal_S17e	1	120

External Links

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GSVIVT01033920001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation