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  5. GSVIVT01034230001

GSVIVT01034230001


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL7 component


Gene families : OG0001283 (Archaeplastida) Phylogenetic Tree(s): OG0001283_tree ,
OG_05_0001263 (LandPlants) Phylogenetic Tree(s): OG_05_0001263_tree ,
OG_06_0001139 (SeedPlants) Phylogenetic Tree(s): OG_06_0001139_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01034230001
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00107780 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
AMTR_s00086p00164400 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
AT1G80750 No alias Ribosomal protein L30/L7 family protein 0.03 Archaeplastida
AT2G01250 No alias Ribosomal protein L30/L7 family protein 0.04 Archaeplastida
Cpa|evm.model.tig00020909.42 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
Cre12.g537800 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
LOC_Os04g51630.1 No alias component RPL7 of LSU proteome component 0.03 Archaeplastida
LOC_Os08g13690.1 No alias component RPL7 of LSU proteome component 0.02 Archaeplastida
MA_109845g0010 No alias component RPL7 of LSU proteome component 0.05 Archaeplastida
MA_47548g0010 No alias component RPL7 of LSU proteome component 0.03 Archaeplastida
Mp3g13040.1 No alias component RPL7 of LSU proteome component 0.05 Archaeplastida
Pp3c2_5820V3.1 No alias Ribosomal protein L30/L7 family protein 0.02 Archaeplastida
Smo103994 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
Solyc06g068400.3.1 No alias component RPL7 of LSU proteome component 0.04 Archaeplastida
Solyc07g008370.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e007015_P002 No alias component RPL7 of LSU proteome component 0.04 Archaeplastida
Zm00001e022294_P001 No alias component RPL7 of LSU proteome component 0.03 Archaeplastida
Zm00001e041593_P001 No alias component RPL7 of LSU proteome component 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Neighborhood
BP GO:0016556 mRNA modification IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
BP GO:0031167 rRNA methylation IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0036265 RNA (guanine-N7)-methylation IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0070475 rRNA base methylation IEP Neighborhood
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Neighborhood
BP GO:0080009 mRNA methylation IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR016082 Ribosomal_L30_ferredoxin-like 88 138
IPR012988 Ribosomal_L30_N 13 76
No external refs found!