1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00045p00161540

AMTR_s00045p00161540 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00045.183

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS16 component


Gene families : OG0002343 (Archaeplastida) Phylogenetic Tree(s): OG0002343_tree ,
OG_05_0002210 (LandPlants) Phylogenetic Tree(s): OG_05_0002210_tree ,
OG_06_0002828 (SeedPlants) Phylogenetic Tree(s): OG_06_0002828_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00161540
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AT2G09990 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.13 Archaeplastida
Cpa|evm.model.tig00000123.14 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
Cre13.g573351 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
GSVIVT01017923001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 Archaeplastida
Gb_05712 No alias component RPS16 of SSU proteome 0.08 Archaeplastida
LOC_Os11g03400.1 No alias component RPS16 of SSU proteome 0.06 Archaeplastida
LOC_Os12g03090.1 No alias component RPS16 of SSU proteome 0.04 Archaeplastida
MA_2656g0010 No alias 40S ribosomal protein S16 OS=Gossypium hirsutum... 0.08 Archaeplastida
MA_32670g0010 No alias component RPS16 of SSU proteome 0.11 Archaeplastida
Mp1g07720.1 No alias component RPS16 of SSU proteome 0.17 Archaeplastida
Mp1g14290.1 No alias component RPS16 of SSU proteome 0.17 Archaeplastida
Pp3c18_1350V3.1 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.12 Archaeplastida
Pp3c19_22410V3.1 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.13 Archaeplastida
Pp3c21_20630V3.1 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.1 Archaeplastida
Pp3c22_21090V3.1 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.12 Archaeplastida
Pp3c9_4180V3.1 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.09 Archaeplastida
Smo138369 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
Solyc01g068530.3.1 No alias component RPS16 of SSU proteome 0.13 Archaeplastida
Solyc04g026100.1.1 No alias component RPS16 of SSU proteome 0.13 Archaeplastida
Solyc05g005690.1.1 No alias component RPS16 of SSU proteome 0.12 Archaeplastida
Zm00001e009230_P001 No alias component RPS16 of SSU proteome 0.05 Archaeplastida
Zm00001e020865_P003 No alias component RPS16 of SSU proteome 0.06 Archaeplastida
Zm00001e039245_P001 No alias component RPS16 of SSU proteome 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0004129 cytochrome-c oxidase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
MF GO:0005544 calcium-dependent phospholipid binding IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
MF GO:0008440 inositol-1,4,5-trisphosphate 3-kinase activity IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
MF GO:0015002 heme-copper terminal oxidase activity IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Neighborhood
BP GO:0015986 ATP synthesis coupled proton transport IEP Neighborhood
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Neighborhood
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0051766 inositol trisphosphate kinase activity IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000754 Ribosomal_S9 19 151
No external refs found!