- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : F-box protein SKP2A OS=Arabidopsis thaliana
Gene families : OG0006421 (Archaeplastida) Phylogenetic Tree(s): OG0006421_tree ,
OG_05_0004976 (LandPlants) Phylogenetic Tree(s): OG_05_0004976_tree ,
OG_06_0004012 (SeedPlants) Phylogenetic Tree(s): OG_06_0004012_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01035471001 | |
| Cluster | HCCA: Cluster_199 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00002p00129520 | evm_27.TU.AmTr_v1... | No description available | 0.02 | Archaeplastida | |
| AMTR_s00024p00232320 | evm_27.TU.AmTr_v1... | No description available | 0.03 | Archaeplastida | |
| Gb_03309 | No alias | no hits & (original description: none) | 0.04 | Archaeplastida | |
| LOC_Os08g35710.1 | No alias | no hits & (original description: none) | 0.09 | Archaeplastida | |
| MA_456304g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
| Solyc01g088620.3.1 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| Solyc07g063740.2.1 | No alias | no hits & (original description: none) | 0.06 | Archaeplastida | |
| Zm00001e016303_P001 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| Zm00001e022206_P001 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000096 | sulfur amino acid metabolic process | IEP | Neighborhood |
| BP | GO:0000097 | sulfur amino acid biosynthetic process | IEP | Neighborhood |
| BP | GO:0001505 | regulation of neurotransmitter levels | IEP | Neighborhood |
| MF | GO:0003824 | catalytic activity | IEP | Neighborhood |
| MF | GO:0003871 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity | IEP | Neighborhood |
| MF | GO:0003924 | GTPase activity | IEP | Neighborhood |
| MF | GO:0004375 | glycine dehydrogenase (decarboxylating) activity | IEP | Neighborhood |
| MF | GO:0004568 | chitinase activity | IEP | Neighborhood |
| MF | GO:0004615 | phosphomannomutase activity | IEP | Neighborhood |
| MF | GO:0005534 | galactose binding | IEP | Neighborhood |
| BP | GO:0006022 | aminoglycan metabolic process | IEP | Neighborhood |
| BP | GO:0006026 | aminoglycan catabolic process | IEP | Neighborhood |
| BP | GO:0006030 | chitin metabolic process | IEP | Neighborhood |
| BP | GO:0006032 | chitin catabolic process | IEP | Neighborhood |
| BP | GO:0006040 | amino sugar metabolic process | IEP | Neighborhood |
| BP | GO:0006520 | cellular amino acid metabolic process | IEP | Neighborhood |
| BP | GO:0006544 | glycine metabolic process | IEP | Neighborhood |
| BP | GO:0006546 | glycine catabolic process | IEP | Neighborhood |
| BP | GO:0006555 | methionine metabolic process | IEP | Neighborhood |
| MF | GO:0008107 | galactoside 2-alpha-L-fucosyltransferase activity | IEP | Neighborhood |
| MF | GO:0008172 | S-methyltransferase activity | IEP | Neighborhood |
| MF | GO:0008417 | fucosyltransferase activity | IEP | Neighborhood |
| BP | GO:0009056 | catabolic process | IEP | Neighborhood |
| BP | GO:0009063 | cellular amino acid catabolic process | IEP | Neighborhood |
| BP | GO:0009066 | aspartate family amino acid metabolic process | IEP | Neighborhood |
| BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | Neighborhood |
| BP | GO:0009069 | serine family amino acid metabolic process | IEP | Neighborhood |
| BP | GO:0009071 | serine family amino acid catabolic process | IEP | Neighborhood |
| BP | GO:0009086 | methionine biosynthetic process | IEP | Neighborhood |
| BP | GO:0009225 | nucleotide-sugar metabolic process | IEP | Neighborhood |
| BP | GO:0009226 | nucleotide-sugar biosynthetic process | IEP | Neighborhood |
| BP | GO:0009298 | GDP-mannose biosynthetic process | IEP | Neighborhood |
| MF | GO:0015095 | magnesium ion transmembrane transporter activity | IEP | Neighborhood |
| BP | GO:0015693 | magnesium ion transport | IEP | Neighborhood |
| CC | GO:0016021 | integral component of membrane | IEP | Neighborhood |
| BP | GO:0016054 | organic acid catabolic process | IEP | Neighborhood |
| MF | GO:0016462 | pyrophosphatase activity | IEP | Neighborhood |
| MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | Neighborhood |
| MF | GO:0016642 | oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor | IEP | Neighborhood |
| MF | GO:0016787 | hydrolase activity | IEP | Neighborhood |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Neighborhood |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Neighborhood |
| MF | GO:0016853 | isomerase activity | IEP | Neighborhood |
| MF | GO:0016868 | intramolecular transferase activity, phosphotransferases | IEP | Neighborhood |
| BP | GO:0016998 | cell wall macromolecule catabolic process | IEP | Neighborhood |
| MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Neighborhood |
| BP | GO:0017144 | drug metabolic process | IEP | Neighborhood |
| BP | GO:0019673 | GDP-mannose metabolic process | IEP | Neighborhood |
| MF | GO:0030246 | carbohydrate binding | IEP | Neighborhood |
| MF | GO:0031127 | alpha-(1,2)-fucosyltransferase activity | IEP | Neighborhood |
| CC | GO:0031224 | intrinsic component of membrane | IEP | Neighborhood |
| MF | GO:0042085 | 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity | IEP | Neighborhood |
| BP | GO:0042133 | neurotransmitter metabolic process | IEP | Neighborhood |
| BP | GO:0042135 | neurotransmitter catabolic process | IEP | Neighborhood |
| BP | GO:0042546 | cell wall biogenesis | IEP | Neighborhood |
| BP | GO:0042737 | drug catabolic process | IEP | Neighborhood |
| BP | GO:0044036 | cell wall macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0044085 | cellular component biogenesis | IEP | Neighborhood |
| BP | GO:0044248 | cellular catabolic process | IEP | Neighborhood |
| BP | GO:0044272 | sulfur compound biosynthetic process | IEP | Neighborhood |
| BP | GO:0044281 | small molecule metabolic process | IEP | Neighborhood |
| BP | GO:0044282 | small molecule catabolic process | IEP | Neighborhood |
| CC | GO:0044425 | membrane part | IEP | Neighborhood |
| BP | GO:0046348 | amino sugar catabolic process | IEP | Neighborhood |
| BP | GO:0046395 | carboxylic acid catabolic process | IEP | Neighborhood |
| MF | GO:0048029 | monosaccharide binding | IEP | Neighborhood |
| BP | GO:0070838 | divalent metal ion transport | IEP | Neighborhood |
| BP | GO:0071554 | cell wall organization or biogenesis | IEP | Neighborhood |
| BP | GO:0072511 | divalent inorganic cation transport | IEP | Neighborhood |
| BP | GO:1901071 | glucosamine-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:1901072 | glucosamine-containing compound catabolic process | IEP | Neighborhood |
| BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | Neighborhood |
| BP | GO:1901136 | carbohydrate derivative catabolic process | IEP | Neighborhood |
| BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Neighborhood |
| BP | GO:1901575 | organic substance catabolic process | IEP | Neighborhood |
| BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Neighborhood |
| BP | GO:1901606 | alpha-amino acid catabolic process | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |