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  5. GSVIVT01035767001

GSVIVT01035767001


Description : Protein degradation.26S proteasome.regulatory particle.ATPase subunits.RPT6 regulatory component


Gene families : OG0003868 (Archaeplastida) Phylogenetic Tree(s): OG0003868_tree ,
OG_05_0003884 (LandPlants) Phylogenetic Tree(s): OG_05_0003884_tree ,
OG_06_0004132 (SeedPlants) Phylogenetic Tree(s): OG_06_0004132_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01035767001
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000792.28 No alias Protein degradation.26S proteasome.regulatory... 0.04 Archaeplastida
Cre04.g216600 No alias Protein degradation.26S proteasome.regulatory... 0.07 Archaeplastida
LOC_Os02g11050.1 No alias regulatory component RPT6 of 26S proteasome 0.02 Archaeplastida
Mp1g04290.1 No alias regulatory component RPT6 of 26S proteasome 0.04 Archaeplastida
Pp3c10_2600V3.1 No alias regulatory particle triple-A ATPase 6A 0.06 Archaeplastida
Pp3c1_21950V3.1 No alias regulatory particle triple-A ATPase 6A 0.06 Archaeplastida
Solyc05g018570.3.1 No alias regulatory component RPT6 of 26S proteasome 0.04 Archaeplastida
Solyc05g018590.3.1 No alias regulatory component RPT6 of 26S proteasome 0.05 Archaeplastida
Zm00001e014515_P001 No alias regulatory component RPT6 of 26S proteasome 0.04 Archaeplastida
Zm00001e024980_P001 No alias regulatory component RPT6 of 26S proteasome 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Neighborhood
CC GO:0000445 THO complex part of transcription export complex IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 199 332
IPR032501 Prot_ATP_ID_OB 86 141
No external refs found!