1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01035807001

GSVIVT01035807001


Description : Pentatricopeptide repeat-containing protein At3g54980, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0017611 (Archaeplastida) Phylogenetic Tree(s): OG0017611_tree ,
OG_05_0017379 (LandPlants) Phylogenetic Tree(s): OG_05_0017379_tree ,
OG_06_0016908 (SeedPlants) Phylogenetic Tree(s): OG_06_0016908_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01035807001
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AT2G39230 LOJ LATERAL ORGAN JUNCTION 0.04 Archaeplastida
AT3G54980 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.11 Archaeplastida
Solyc08g067060.2.1 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.1 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 222 251
IPR002885 Pentatricopeptide_repeat 399 426
IPR002885 Pentatricopeptide_repeat 189 216
IPR002885 Pentatricopeptide_repeat 152 178
IPR002885 Pentatricopeptide_repeat 676 704
IPR002885 Pentatricopeptide_repeat 564 595
IPR002885 Pentatricopeptide_repeat 427 456
IPR002885 Pentatricopeptide_repeat 529 554
IPR002885 Pentatricopeptide_repeat 711 756
IPR002885 Pentatricopeptide_repeat 777 823
IPR002885 Pentatricopeptide_repeat 257 300
IPR002885 Pentatricopeptide_repeat 462 508
IPR002885 Pentatricopeptide_repeat 324 372
IPR002885 Pentatricopeptide_repeat 602 651
No external refs found!