AMTR_s00045p00203220 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00045.266

Description : Vesicle trafficking.autophagosome formation.cargo recruitment.TSPO autophagic adapter protein

Gene families : OG0003242 (Archaeplastida) Phylogenetic Tree(s): OG0003242_tree ,
OG_05_0004213 (LandPlants) Phylogenetic Tree(s): OG_05_0004213_tree ,
OG_06_0009852 (SeedPlants) Phylogenetic Tree(s): OG_06_0009852_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: AMTR_s00045p00203220
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Pp3c4_22190V3.1 No alias TSPO(outer membrane tryptophan-rich sensory protein)-related 0.02 Archaeplastida
Smo88870 No alias Vesicle trafficking.autophagosome formation.cargo... 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0004871 obsolete signal transducer activity IEP Neighborhood
CC GO:0005834 heterotrimeric G-protein complex IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0030029 actin filament-based process IEP Neighborhood
BP GO:0030036 actin cytoskeleton organization IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
CC GO:1905360 GTPase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR004307 TspO_MBR 40 178
No external refs found!