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  5. GSVIVT01036096001

GSVIVT01036096001


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS14 component


Gene families : OG0002067 (Archaeplastida) Phylogenetic Tree(s): OG0002067_tree ,
OG_05_0002738 (LandPlants) Phylogenetic Tree(s): OG_05_0002738_tree ,
OG_06_0002374 (SeedPlants) Phylogenetic Tree(s): OG_06_0002374_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01036096001
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00104960 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.24 Archaeplastida
AT2G36160 No alias Ribosomal protein S11 family protein 0.42 Archaeplastida
AT3G11510 No alias Ribosomal protein S11 family protein 0.22 Archaeplastida
AT3G52580 No alias Ribosomal protein S11 family protein 0.4 Archaeplastida
Cpa|evm.model.tig00001154.44 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.33 Archaeplastida
Cre11.g480150 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
Gb_17066 No alias component RPS14 of SSU proteome 0.14 Archaeplastida
Gb_17067 No alias component RPS14 of SSU proteome 0.12 Archaeplastida
LOC_Os02g06700.1 No alias component RPS14 of SSU proteome 0.13 Archaeplastida
LOC_Os02g33140.1 No alias component RPS14 of SSU proteome 0.45 Archaeplastida
MA_113075g0010 No alias component RPS14 of SSU proteome 0.05 Archaeplastida
Mp8g03250.1 No alias component RPS14 of SSU proteome 0.33 Archaeplastida
Mp8g10900.1 No alias component RPS14 of SSU proteome 0.37 Archaeplastida
Pp3c15_22240V3.1 No alias Ribosomal protein S11 family protein 0.41 Archaeplastida
Pp3c9_21480V3.1 No alias Ribosomal protein S11 family protein 0.17 Archaeplastida
Smo183051 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 Archaeplastida
Solyc09g010100.3.1 No alias component RPS14 of SSU proteome 0.3 Archaeplastida
Solyc10g083280.4.1 No alias component RPS14 of SSU proteome 0.34 Archaeplastida
Zm00001e013028_P001 No alias component RPS14 of SSU proteome 0.02 Archaeplastida
Zm00001e022659_P002 No alias component RPS14 of SSU proteome 0.24 Archaeplastida
Zm00001e030302_P001 No alias component RPS14 of SSU proteome 0.31 Archaeplastida
Zm00001e030303_P001 No alias component RPS14 of SSU proteome 0.2 Archaeplastida
Zm00001e030304_P001 No alias component RPS14 of SSU proteome 0.03 Archaeplastida
Zm00001e037468_P002 No alias component RPS14 of SSU proteome 0.36 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Neighborhood
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
InterPro domains Description Start Stop
IPR001971 Ribosomal_S11 69 187
No external refs found!