GSVIVT01036169001

Description : Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01036169001
Cluster	HCCA: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00263110	No alias	Pentatricopeptide repeat-containing protein At1g03540...	0.03	Archaeplastida
AMTR_s00014p00068600	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g43980,...	0.04	Archaeplastida
AMTR_s00038p00071780	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g26540...	0.03	Archaeplastida
AMTR_s00061p00127300	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g12770...	0.04	Archaeplastida
AMTR_s00063p00172440	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
AMTR_s00077p00031710	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
AMTR_s00147p00097570	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g03880,...	0.04	Archaeplastida
AMTR_s02193p00008230	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g02330,...	0.04	Archaeplastida
AT1G11290	CRR22	Pentatricopeptide repeat (PPR) superfamily protein	0.07	Archaeplastida
AT1G15510	VAC1, ECB2, ATECB2	Tetratricopeptide repeat (TPR)-like superfamily protein	0.07	Archaeplastida
AT2G03880	REME1	Pentatricopeptide repeat (PPR) superfamily protein	0.04	Archaeplastida
AT2G04860	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.04	Archaeplastida
AT3G13770	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.07	Archaeplastida
AT3G63370	OTP86	Tetratricopeptide repeat (TPR)-like superfamily protein	0.06	Archaeplastida
AT4G13650	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.08	Archaeplastida
AT4G18750	DOT4	Pentatricopeptide repeat (PPR) superfamily protein	0.05	Archaeplastida
AT4G39952	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.05	Archaeplastida
AT5G03800	emb1899, EMB175, EMB166	Pentatricopeptide repeat (PPR) superfamily protein	0.06	Archaeplastida
GSVIVT01035837001	No alias	Pentatricopeptide repeat-containing protein At4g21065...	0.05	Archaeplastida
Gb_24823	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
Gb_29557	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
Gb_29874	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.04	Archaeplastida
Gb_32452	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.04	Archaeplastida
LOC_Os01g55960.1	No alias	Pentatricopeptide repeat-containing protein At5g56310...	0.04	Archaeplastida
LOC_Os06g08650.1	No alias	Pentatricopeptide repeat-containing protein At2g03380,...	0.03	Archaeplastida
LOC_Os10g33730.1	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.05	Archaeplastida
MA_10431227g0020	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.04	Archaeplastida
MA_10433543g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
MA_124868g0020	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
MA_135075g0020	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_17949g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.04	Archaeplastida
MA_43615g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_89214g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_9526611g0020	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
Pp3c24_8560V3.1	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.05	Archaeplastida
Smo74627	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Smo81196	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.05	Archaeplastida
Solyc01g099000.1.1	No alias	Pentatricopeptide repeat-containing protein At3g05340...	0.04	Archaeplastida
Solyc02g094125.1.1	No alias	Pentatricopeptide repeat-containing protein At5g56310...	0.07	Archaeplastida
Solyc03g051780.3.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.06	Archaeplastida
Solyc03g082830.2.1	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.04	Archaeplastida
Solyc07g045510.4.1	No alias	RNA editing factor (MEF7)	0.07	Archaeplastida
Solyc07g062820.1.1	No alias	RNA editing factor (SEL1/PDM1)	0.03	Archaeplastida
Solyc09g007040.1.1	No alias	Pentatricopeptide repeat-containing protein At3g53360,...	0.04	Archaeplastida
Solyc09g008300.2.1	No alias	Pentatricopeptide repeat-containing protein At2g29760,...	0.07	Archaeplastida
Solyc11g065250.1.1	No alias	Pentatricopeptide repeat-containing protein At5g39680...	0.04	Archaeplastida
Zm00001e001007_P001	No alias	Putative pentatricopeptide repeat-containing protein...	0.05	Archaeplastida
Zm00001e001038_P001	No alias	Pentatricopeptide repeat-containing protein At1g08070,...	0.05	Archaeplastida
Zm00001e001918_P001	No alias	Pentatricopeptide repeat-containing protein At4g33990...	0.04	Archaeplastida
Zm00001e002234_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e003284_P001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Zm00001e006389_P001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Zm00001e009484_P001	No alias	Pentatricopeptide repeat-containing protein At1g71490...	0.04	Archaeplastida
Zm00001e011923_P001	No alias	Pentatricopeptide repeat-containing protein At4g21300...	0.03	Archaeplastida
Zm00001e013116_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e013211_P001	No alias	Pentatricopeptide repeat-containing protein At5g48910...	0.04	Archaeplastida
Zm00001e018346_P001	No alias	Pentatricopeptide repeat-containing protein At3g29230...	0.05	Archaeplastida
Zm00001e022858_P001	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
Zm00001e028503_P001	No alias	no hits & (original description: none)	0.06	Archaeplastida
Zm00001e029119_P001	No alias	Pentatricopeptide repeat-containing protein At2g33760...	0.09	Archaeplastida
Zm00001e031396_P001	No alias	Pentatricopeptide repeat-containing protein At1g20230...	0.03	Archaeplastida
Zm00001e032242_P001	No alias	Pentatricopeptide repeat-containing protein At1g18485...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0003916	DNA topoisomerase activity	IEP	Neighborhood
MF	GO:0004222	metalloendopeptidase activity	IEP	Neighborhood
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006265	DNA topological change	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006996	organelle organization	IEP	Neighborhood
BP	GO:0008033	tRNA processing	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0008170	N-methyltransferase activity	IEP	Neighborhood
MF	GO:0008173	RNA methyltransferase activity	IEP	Neighborhood
MF	GO:0008175	tRNA methyltransferase activity	IEP	Neighborhood
MF	GO:0008237	metallopeptidase activity	IEP	Neighborhood
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0051276	chromosome organization	IEP	Neighborhood
BP	GO:0071103	DNA conformation change	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	232	257
IPR002885	Pentatricopeptide_repeat	260	290
IPR002885	Pentatricopeptide_repeat	333	356
IPR002885	Pentatricopeptide_repeat	537	561
IPR002885	Pentatricopeptide_repeat	437	458
IPR002885	Pentatricopeptide_repeat	463	509
IPR002885	Pentatricopeptide_repeat	156	204
IPR002885	Pentatricopeptide_repeat	360	408
IPR032867	DYW_dom	637	760

External Links

No external refs found!

GSVIVT01036169001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation