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  5. GSVIVT01037235001

GSVIVT01037235001


Description : RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.CHR5 component


Gene families : OG0000082 (Archaeplastida) Phylogenetic Tree(s): OG0000082_tree ,
OG_05_0006319 (LandPlants) Phylogenetic Tree(s): OG_05_0006319_tree ,
OG_06_0009471 (SeedPlants) Phylogenetic Tree(s): OG_06_0009471_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01037235001
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00216420 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
AMTR_s00053p00098350 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.04 Archaeplastida
AMTR_s00071p00058700 evm_27.TU.AmTr_v1... CHD3-type chromatin-remodeling factor PICKLE... 0.05 Archaeplastida
AMTR_s00086p00165640 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.08 Archaeplastida
AMTR_s00090p00148990 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.12 Archaeplastida
AMTR_s00148p00090060 evm_27.TU.AmTr_v1... Helicase protein MOM1 OS=Arabidopsis thaliana 0.07 Archaeplastida
AT1G08060 MOM1, MOM ATP-dependent helicase family protein 0.13 Archaeplastida
AT2G13370 CHR5 chromatin remodeling 5 0.18 Archaeplastida
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.03 Archaeplastida
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.18 Archaeplastida
AT2G46020 CHA2, CHR2, BRM, ATBRM transcription regulatory protein SNF2, putative 0.16 Archaeplastida
AT3G06010 ATCHR12 Homeotic gene regulator 0.05 Archaeplastida
AT3G06400 CHR11 chromatin-remodeling protein 11 0.03 Archaeplastida
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.17 Archaeplastida
Cpa|evm.model.tig00000128.11 No alias ISWI chromatin-remodeling complex ATPase CHR17... 0.02 Archaeplastida
Cpa|evm.model.tig00000350.9 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Cpa|evm.model.tig00000802.67 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00000983.26 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 Archaeplastida
Cpa|evm.model.tig00020848.66 No alias Probable helicase CHR10 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00020960.24 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cpa|evm.model.tig00021623.13 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 Archaeplastida
Cre03.g179300 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 Archaeplastida
Cre07.g325700 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana 0.04 Archaeplastida
Cre08.g377200 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Cre12.g508150 No alias Chromatin organisation.chromatin remodeling... 0.01 Archaeplastida
Cre12.g537671 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.06 Archaeplastida
Gb_01673 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana... 0.09 Archaeplastida
Gb_16961 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
Gb_27153 No alias chromatin remodeling factor (Snf2) 0.06 Archaeplastida
Gb_35181 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.06 Archaeplastida
LOC_Os02g02050.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.08 Archaeplastida
LOC_Os05g05230.1 No alias chromatin remodeling factor (Snf2) 0.06 Archaeplastida
LOC_Os05g05780.1 No alias chromatin remodeling factor (Iswi) 0.03 Archaeplastida
LOC_Os06g01320.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os06g08480.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.07 Archaeplastida
LOC_Os06g14406.1 No alias Chromatin structure-remodeling complex protein SYD... 0.03 Archaeplastida
LOC_Os07g31450.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.04 Archaeplastida
LOC_Os07g46590.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.06 Archaeplastida
MA_10427682g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_10429361g0010 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.05 Archaeplastida
MA_10436824g0010 No alias No annotation 0.07 Archaeplastida
MA_137856g0010 No alias chromatin remodeling factor (Snf2) 0.08 Archaeplastida
MA_141135g0010 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.04 Archaeplastida
MA_23378g0020 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.03 Archaeplastida
MA_470488g0010 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_637555g0010 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.08 Archaeplastida
MA_8926002g0010 No alias Chromatin structure-remodeling complex protein SYD... 0.11 Archaeplastida
MA_9572741g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.08 Archaeplastida
Mp1g17010.1 No alias chromatin remodeling factor (Snf2) 0.09 Archaeplastida
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.08 Archaeplastida
Mp4g00040.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.06 Archaeplastida
Mp5g06580.2 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
Mp5g24460.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
Pp3c10_2280V3.1 No alias chromatin remodeling 4 0.05 Archaeplastida
Pp3c11_18940V3.1 No alias chromatin-remodeling protein 11 0.07 Archaeplastida
Pp3c13_14440V3.1 No alias transcription regulatory protein SNF2, putative 0.05 Archaeplastida
Pp3c13_19680V3.1 No alias chromatin remodeling 4 0.1 Archaeplastida
Pp3c14_90V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.12 Archaeplastida
Pp3c18_19040V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 Archaeplastida
Pp3c18_19045V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 Archaeplastida
Pp3c21_10800V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.06 Archaeplastida
Pp3c27_3890V3.1 No alias Homeotic gene regulator 0.05 Archaeplastida
Pp3c3_15820V3.1 No alias transcription regulatory protein SNF2, putative 0.08 Archaeplastida
Pp3c5_19940V3.1 No alias chromatin remodeling 5 0.08 Archaeplastida
Pp3c6_10390V3.1 No alias chromatin remodeling 5 0.08 Archaeplastida
Smo102849 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Smo130534 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Smo155996 No alias Chromatin organisation.chromatin remodeling... 0.06 Archaeplastida
Smo177985 No alias Chromatin organisation.chromatin remodeling... 0.1 Archaeplastida
Smo440203 No alias Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
Smo440558 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.07 Archaeplastida
Smo440815 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.09 Archaeplastida
Solyc01g067390.4.1 No alias chromatin remodeling factor (Iswi) 0.03 Archaeplastida
Solyc01g094800.4.1 No alias chromatin remodeling factor (Snf2) 0.07 Archaeplastida
Solyc02g068560.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.06 Archaeplastida
Solyc06g010240.3.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Solyc06g065730.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.06 Archaeplastida
Solyc08g029130.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
Solyc11g062010.3.1 No alias chromatin remodeling factor (Snf2) 0.13 Archaeplastida
Solyc12g099910.2.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.05 Archaeplastida
Zm00001e010722_P005 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e010908_P001 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e013442_P001 No alias chromatin remodeling factor (Snf2) 0.13 Archaeplastida
Zm00001e030969_P003 No alias chromatin remodeling factor (Snf2) 0.13 Archaeplastida
Zm00001e036737_P001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.11 Archaeplastida
Zm00001e040406_P002 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005244 voltage-gated ion channel activity IEP Neighborhood
MF GO:0005247 voltage-gated chloride channel activity IEP Neighborhood
MF GO:0005253 anion channel activity IEP Neighborhood
MF GO:0005254 chloride channel activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006821 chloride transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
MF GO:0008308 voltage-gated anion channel activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
MF GO:0015108 chloride transmembrane transporter activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0022832 voltage-gated channel activity IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 739 851
IPR023780 Chromo_domain 330 384
IPR000330 SNF2_N 437 709
IPR025260 DUF4208 1332 1424
No external refs found!