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  5. GSVIVT01037488001

GSVIVT01037488001


Description : Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.AGO siRNA-integrating factor


Gene families : OG0000124 (Archaeplastida) Phylogenetic Tree(s): OG0000124_tree ,
OG_05_0001060 (LandPlants) Phylogenetic Tree(s): OG_05_0001060_tree ,
OG_06_0001214 (SeedPlants) Phylogenetic Tree(s): OG_06_0001214_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01037488001
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00203090 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.06 Archaeplastida
AMTR_s00044p00049370 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.04 Archaeplastida
AT1G48410 AGO1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.05 Archaeplastida
AT2G27040 AGO4, OCP11 Argonaute family protein 0.05 Archaeplastida
Gb_34718 No alias Protein argonaute 10 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os02g45070.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 Archaeplastida
LOC_Os02g58490.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.07 Archaeplastida
LOC_Os03g33650.1 No alias Protein argonaute 7 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os04g06770.2 No alias siRNA-integrating factor (AGO) 0.05 Archaeplastida
LOC_Os04g47870.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.04 Archaeplastida
LOC_Os06g39640.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.07 Archaeplastida
MA_10427420g0010 No alias Protein argonaute PNH1 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_10428886g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10429131g0010 No alias Protein argonaute 1B OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_118377g0010 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.06 Archaeplastida
MA_14457g0020 No alias Protein argonaute 4B OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_18547g0010 No alias Protein argonaute 1A OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_594g0010 No alias Protein argonaute PNH1 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Mp1g18110.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 Archaeplastida
Mp1g23190.1 No alias siRNA-integrating factor (AGO) 0.02 Archaeplastida
Solyc01g008960.3.1 No alias siRNA-integrating factor (AGO) 0.04 Archaeplastida
Solyc03g098280.4.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.06 Archaeplastida
Solyc06g072300.4.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.08 Archaeplastida
Solyc07g049500.3.1 No alias siRNA-integrating factor (AGO) 0.05 Archaeplastida
Solyc12g006790.3.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.01 Archaeplastida
Zm00001e017367_P001 No alias siRNA-integrating factor (AGO) 0.03 Archaeplastida
Zm00001e027670_P001 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.03 Archaeplastida
Zm00001e032609_P001 No alias siRNA-integrating factor (AGO) 0.05 Archaeplastida
Zm00001e037347_P002 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.07 Archaeplastida
Zm00001e041452_P004 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0004003 ATP-dependent DNA helicase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006664 glycolipid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
MF GO:0009029 tetraacyldisaccharide 4'-kinase activity IEP Neighborhood
BP GO:0009245 lipid A biosynthetic process IEP Neighborhood
BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0046467 membrane lipid biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046493 lipid A metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901269 lipooligosaccharide metabolic process IEP Neighborhood
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903509 liposaccharide metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003165 Piwi 567 874
IPR032472 ArgoL2 423 468
IPR003100 PAZ_dom 283 413
IPR032473 Argonaute_Mid_dom 477 528
IPR014811 ArgoL1 228 276
IPR032474 Argonaute_N 56 216
No external refs found!