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  5. AMTR_s00046p00076360

AMTR_s00046p00076360 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00046.31

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS16 component


Gene families : OG0002343 (Archaeplastida) Phylogenetic Tree(s): OG0002343_tree ,
OG_05_0002210 (LandPlants) Phylogenetic Tree(s): OG_05_0002210_tree ,
OG_06_0002828 (SeedPlants) Phylogenetic Tree(s): OG_06_0002828_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00046p00076360
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AT2G09990 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.17 Archaeplastida
Cpa|evm.model.tig00000123.14 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 Archaeplastida
Cre13.g573351 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 Archaeplastida
GSVIVT01017923001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.2 Archaeplastida
Gb_05712 No alias component RPS16 of SSU proteome 0.13 Archaeplastida
LOC_Os11g03400.1 No alias component RPS16 of SSU proteome 0.07 Archaeplastida
LOC_Os12g03090.1 No alias component RPS16 of SSU proteome 0.09 Archaeplastida
MA_2656g0010 No alias 40S ribosomal protein S16 OS=Gossypium hirsutum... 0.13 Archaeplastida
MA_32670g0010 No alias component RPS16 of SSU proteome 0.19 Archaeplastida
Mp1g07720.1 No alias component RPS16 of SSU proteome 0.28 Archaeplastida
Mp1g14290.1 No alias component RPS16 of SSU proteome 0.28 Archaeplastida
Pp3c18_1350V3.1 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.23 Archaeplastida
Pp3c19_22410V3.1 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.23 Archaeplastida
Pp3c21_20630V3.1 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.24 Archaeplastida
Pp3c22_21090V3.1 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.22 Archaeplastida
Pp3c9_4180V3.1 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.09 Archaeplastida
Smo138369 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
Solyc01g068530.3.1 No alias component RPS16 of SSU proteome 0.23 Archaeplastida
Solyc04g026100.1.1 No alias component RPS16 of SSU proteome 0.23 Archaeplastida
Solyc05g005690.1.1 No alias component RPS16 of SSU proteome 0.2 Archaeplastida
Zm00001e009230_P001 No alias component RPS16 of SSU proteome 0.11 Archaeplastida
Zm00001e020865_P003 No alias component RPS16 of SSU proteome 0.12 Archaeplastida
Zm00001e039245_P001 No alias component RPS16 of SSU proteome 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
MF GO:0005544 calcium-dependent phospholipid binding IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000754 Ribosomal_S9 16 148
No external refs found!