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  5. GSVIVT01037894001

GSVIVT01037894001


Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.PHD transcription factor


Gene families : OG0001716 (Archaeplastida) Phylogenetic Tree(s): OG0001716_tree ,
OG_05_0001846 (LandPlants) Phylogenetic Tree(s): OG_05_0001846_tree ,
OG_06_0001493 (SeedPlants) Phylogenetic Tree(s): OG_06_0001493_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01037894001
Cluster HCCA: Cluster_238

Target Alias Description ECC score Gene Family Method Actions
AT3G19510 HAT3.1 Homeodomain-like protein with RING/FYVE/PHD-type zinc... 0.03 Archaeplastida
Cre12.g492200 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
LOC_Os02g05450.1 No alias transcription factor (PHD) 0.03 Archaeplastida
LOC_Os06g12400.1 No alias transcription factor (PHD) 0.03 Archaeplastida
MA_10427612g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp4g02060.1 No alias transcription factor (PHD) 0.07 Archaeplastida
Zm00001e019808_P001 No alias transcription factor (PHD) 0.02 Archaeplastida
Zm00001e029056_P003 No alias transcription factor (PHD) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004003 ATP-dependent DNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 310 365
IPR001356 Homeobox_dom 682 725
No external refs found!