GSVIVT01038474001


Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0002316 (SeedPlants) Phylogenetic Tree(s): OG_06_0002316_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01038474001

Target Alias Description ECC score Gene Family Method Actions
AT2G22540 SVP, AGL22 K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
AT2G45650 AGL6 AGAMOUS-like 6 0.02 Archaeplastida
AT3G54340 AP3, ATAP3 K-box region and MADS-box transcription factor family protein 0.01 Archaeplastida
AT5G20240 PI K-box region and MADS-box transcription factor family protein 0.02 Archaeplastida
GSVIVT01008139001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01008560001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01008806001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01009171001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.11 Archaeplastida
GSVIVT01009815001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01010521001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01012110001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01018446001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.08 Archaeplastida
GSVIVT01018839001 No alias Floral homeotic protein DEFICIENS OS=Antirrhinum majus 0.02 Archaeplastida
GSVIVT01019883001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01025945001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01026207001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01027579001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.07 Archaeplastida
GSVIVT01035477001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01037022001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01037034001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
Gb_12586 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Gb_41550 No alias transcription factor (MADS/AGL) 0.08 Archaeplastida
LOC_Os03g08754.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
MA_13933g0010 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
MA_18048g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_6279308g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_9382435g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_9841429g0010 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Pp3c16_19170V3.1 No alias AGAMOUS-like 61 0.01 Archaeplastida
Pp3c25_6940V3.1 No alias AGAMOUS-like 62 0.01 Archaeplastida
Solyc01g080785.1.1 No alias transcription factor (MADS/AGL) 0.07 Archaeplastida
Solyc04g081000.3.1 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Solyc06g059970.4.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc08g067230.4.1 No alias No annotation 0.02 Archaeplastida
Solyc11g032100.2.1 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0005488 binding IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
IPR002487 TF_Kbox 84 170
No external refs found!