GSVIVT01038474001

Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0002316 (SeedPlants) Phylogenetic Tree(s): OG_06_0002316_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01038474001

Target	Alias	Description	ECC score	Gene Family Method
AT2G22540	SVP, AGL22	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT2G45650	AGL6	AGAMOUS-like 6	0.02	Archaeplastida
AT3G54340	AP3, ATAP3	K-box region and MADS-box transcription factor family protein	0.01	Archaeplastida
AT5G20240	PI	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
GSVIVT01008139001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01008560001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.01	Archaeplastida
GSVIVT01008806001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01009171001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.11	Archaeplastida
GSVIVT01009815001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01010521001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.01	Archaeplastida
GSVIVT01012110001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.01	Archaeplastida
GSVIVT01018446001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.08	Archaeplastida
GSVIVT01018839001	No alias	Floral homeotic protein DEFICIENS OS=Antirrhinum majus	0.02	Archaeplastida
GSVIVT01019883001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01025945001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.01	Archaeplastida
GSVIVT01026207001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.01	Archaeplastida
GSVIVT01027579001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.07	Archaeplastida
GSVIVT01035477001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.01	Archaeplastida
GSVIVT01037022001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01037034001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
Gb_12586	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Gb_41550	No alias	transcription factor (MADS/AGL)	0.08	Archaeplastida
LOC_Os03g08754.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
MA_13933g0010	No alias	transcription factor (MADS/AGL)	0.01	Archaeplastida
MA_18048g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_6279308g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_9382435g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_9841429g0010	No alias	transcription factor (MADS/AGL)	0.01	Archaeplastida
Pp3c16_19170V3.1	No alias	AGAMOUS-like 61	0.01	Archaeplastida
Pp3c25_6940V3.1	No alias	AGAMOUS-like 62	0.01	Archaeplastida
Solyc01g080785.1.1	No alias	transcription factor (MADS/AGL)	0.07	Archaeplastida
Solyc04g081000.3.1	No alias	transcription factor (MADS/AGL)	0.01	Archaeplastida
Solyc06g059970.4.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc08g067230.4.1	No alias	No annotation	0.02	Archaeplastida
Solyc11g032100.2.1	No alias	transcription factor (MADS/AGL)	0.01	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0043531	ADP binding	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	57
IPR002487	TF_Kbox	84	170

External Links

No external refs found!

GSVIVT01038474001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation