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  5. AT1G49940

AT1G49940


Description : BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G04770.1); Has 40 Blast hits to 40 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).


Gene families : OG0000793 (Archaeplastida) Phylogenetic Tree(s): OG0000793_tree ,
OG_05_0026819 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0000780 (SeedPlants) Phylogenetic Tree(s): OG_06_0000780_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G49940
Cluster HCCA: Cluster_240

Target Alias Description ECC score Gene Family Method Actions
LOC_Os09g36740.1 No alias meiotic exit regulator (MS5/TDM1) 0.03 Archaeplastida
Zm00001e010252_P001 No alias meiotic exit regulator (MS5/TDM1) 0.03 Archaeplastida
Zm00001e035992_P002 No alias meiotic exit regulator (MS5/TDM1) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0009507 chloroplast ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0003002 regionalization IEP Neighborhood
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0004871 obsolete signal transducer activity IEP Neighborhood
MF GO:0005253 anion channel activity IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005834 heterotrimeric G-protein complex IEP Neighborhood
BP GO:0006360 transcription by RNA polymerase I IEP Neighborhood
BP GO:0007276 gamete generation IEP Neighborhood
MF GO:0008308 voltage-gated anion channel activity IEP Neighborhood
BP GO:0009615 response to virus IEP Neighborhood
BP GO:0009845 seed germination IEP Neighborhood
BP GO:0009965 leaf morphogenesis IEP Neighborhood
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0030422 production of siRNA involved in RNA interference IEP Neighborhood
BP GO:0031050 dsRNA fragmentation IEP Neighborhood
BP GO:0032875 regulation of DNA endoreduplication IEP Neighborhood
CC GO:0033597 mitotic checkpoint complex IEP Neighborhood
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP Neighborhood
BP GO:0042127 regulation of cell proliferation IEP Neighborhood
BP GO:0048314 embryo sac morphogenesis IEP Neighborhood
CC GO:0048353 primary endosperm nucleus IEP Neighborhood
BP GO:0048437 floral organ development IEP Neighborhood
BP GO:0048446 petal morphogenesis IEP Neighborhood
BP GO:0048482 plant ovule morphogenesis IEP Neighborhood
BP GO:0048598 embryonic morphogenesis IEP Neighborhood
BP GO:0051567 histone H3-K9 methylation IEP Neighborhood
BP GO:0051607 defense response to virus IEP Neighborhood
BP GO:0061647 histone H3-K9 modification IEP Neighborhood
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP Neighborhood
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
CC GO:1905360 GTPase complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!