GSVIVT01038670001

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL9 component

Gene families : OG0002651 (Archaeplastida) Phylogenetic Tree(s): OG0002651_tree ,
OG_05_0002585 (LandPlants) Phylogenetic Tree(s): OG_05_0002585_tree ,
OG_06_0002821 (SeedPlants) Phylogenetic Tree(s): OG_06_0002821_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01038670001
Cluster	HCCA: Cluster_132

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00018p00131950	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	Archaeplastida
AMTR_s00048p00062300	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	Archaeplastida
AT1G33120	No alias	Ribosomal protein L6 family	0.12	Archaeplastida
AT1G33140	PGY2	Ribosomal protein L6 family	0.15	Archaeplastida
AT4G10450	No alias	Ribosomal protein L6 family	0.04	Archaeplastida
Cpa\|evm.model.tig00001532.12	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.14	Archaeplastida
Cre12.g494050	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.18	Archaeplastida
GSVIVT01016795001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	Archaeplastida
Gb_36692	No alias	component RPL9 of LSU proteome component	0.03	Archaeplastida
LOC_Os02g01332.1	No alias	component RPL9 of LSU proteome component	0.03	Archaeplastida
LOC_Os09g31180.1	No alias	component RPL9 of LSU proteome component	0.14	Archaeplastida
MA_38141g0010	No alias	component RPL9 of LSU proteome component	0.09	Archaeplastida
Mp4g24070.1	No alias	component RPL9 of LSU proteome component	0.18	Archaeplastida
Pp3c10_8500V3.1	No alias	Ribosomal protein L6 family	0.1	Archaeplastida
Pp3c14_8600V3.1	No alias	Ribosomal protein L6 family	0.18	Archaeplastida
Pp3c16_20070V3.1	No alias	Ribosomal protein L6 family	0.09	Archaeplastida
Pp3c27_8190V3.1	No alias	Ribosomal protein L6 family	0.17	Archaeplastida
Smo269009	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	Archaeplastida
Solyc06g073310.3.1	No alias	component RPL9 of LSU proteome component	0.14	Archaeplastida
Solyc08g014550.3.1	No alias	component RPL9 of LSU proteome component	0.11	Archaeplastida
Solyc12g096700.2.1	No alias	component RPL9 of LSU proteome component	0.2	Archaeplastida
Zm00001e025404_P001	No alias	component RPL9 of LSU proteome component	0.07	Archaeplastida
Zm00001e029810_P003	No alias	component RPL9 of LSU proteome component	0.15	Archaeplastida
Zm00001e036699_P002	No alias	component RPL9 of LSU proteome component	0.15	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004061	arylformamidase activity	IEP	Neighborhood
CC	GO:0005622	intracellular	IEP	Neighborhood
CC	GO:0005787	signal peptidase complex	IEP	Neighborhood
BP	GO:0006465	signal peptide processing	IEP	Neighborhood
BP	GO:0006568	tryptophan metabolic process	IEP	Neighborhood
BP	GO:0006569	tryptophan catabolic process	IEP	Neighborhood
BP	GO:0006576	cellular biogenic amine metabolic process	IEP	Neighborhood
BP	GO:0006586	indolalkylamine metabolic process	IEP	Neighborhood
BP	GO:0009063	cellular amino acid catabolic process	IEP	Neighborhood
BP	GO:0009072	aromatic amino acid family metabolic process	IEP	Neighborhood
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	Neighborhood
BP	GO:0009308	amine metabolic process	IEP	Neighborhood
BP	GO:0009310	amine catabolic process	IEP	Neighborhood
BP	GO:0016054	organic acid catabolic process	IEP	Neighborhood
BP	GO:0016485	protein processing	IEP	Neighborhood
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Neighborhood
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Neighborhood
BP	GO:0019441	tryptophan catabolic process to kynurenine	IEP	Neighborhood
BP	GO:0042180	cellular ketone metabolic process	IEP	Neighborhood
BP	GO:0042402	cellular biogenic amine catabolic process	IEP	Neighborhood
BP	GO:0042430	indole-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042436	indole-containing compound catabolic process	IEP	Neighborhood
BP	GO:0042537	benzene-containing compound metabolic process	IEP	Neighborhood
BP	GO:0044106	cellular amine metabolic process	IEP	Neighborhood
BP	GO:0044282	small molecule catabolic process	IEP	Neighborhood
CC	GO:0044432	endoplasmic reticulum part	IEP	Neighborhood
BP	GO:0046218	indolalkylamine catabolic process	IEP	Neighborhood
BP	GO:0046395	carboxylic acid catabolic process	IEP	Neighborhood
BP	GO:0051604	protein maturation	IEP	Neighborhood
BP	GO:0070189	kynurenine metabolic process	IEP	Neighborhood
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Neighborhood
BP	GO:1901606	alpha-amino acid catabolic process	IEP	Neighborhood
CC	GO:1905368	peptidase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR020040	Ribosomal_L6_a/b-dom	8	87

External Links

No external refs found!

GSVIVT01038670001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation