1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre02.g077300

Cre02.g077300


Description : RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Nop1/fibrillarin methyltransferase component


Gene families : OG0003455 (Archaeplastida) Phylogenetic Tree(s): OG0003455_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre02.g077300
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00218020 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.05 Archaeplastida
AT4G25630 FIB2, ATFIB2 fibrillarin 2 0.04 Archaeplastida
AT5G52470 FIB1, ATFIB1,... fibrillarin 1 0.04 Archaeplastida
Cpa|evm.model.tig00001049.16 No alias RNA processing.RNA modification.rRNA/tRNA... 0.08 Archaeplastida
GSVIVT01028887001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.07 Archaeplastida
Gb_33899 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.04 Archaeplastida
LOC_Os02g57590.1 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.02 Archaeplastida
LOC_Os05g08360.1 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.03 Archaeplastida
MA_124463g0010 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.05 Archaeplastida
Mp2g12880.1 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.06 Archaeplastida
Pp3c16_12410V3.1 No alias fibrillarin 2 0.1 Archaeplastida
Pp3c27_4160V3.1 No alias fibrillarin 2 0.04 Archaeplastida
Pp3c5_11200V3.1 No alias fibrillarin 2 0.04 Archaeplastida
Pp3c6_12420V3.1 No alias fibrillarin 2 0.07 Archaeplastida
Smo171051 No alias RNA processing.RNA modification.rRNA/tRNA... 0.03 Archaeplastida
Solyc03g025270.3.1 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.07 Archaeplastida
Zm00001e023572_P001 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004019 adenylosuccinate synthase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006664 glycolipid metabolic process IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
BP GO:0008654 phospholipid biosynthetic process IEP Neighborhood
MF GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IEP Neighborhood
BP GO:0009245 lipid A biosynthetic process IEP Neighborhood
BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
BP GO:0009311 oligosaccharide metabolic process IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019213 deacetylase activity IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046467 membrane lipid biosynthetic process IEP Neighborhood
BP GO:0046493 lipid A metabolic process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090407 organophosphate biosynthetic process IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901269 lipooligosaccharide metabolic process IEP Neighborhood
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Neighborhood
BP GO:1903509 liposaccharide metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000692 Fibrillarin 83 308
No external refs found!