Coexpression cluster: Cluster_22 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016070 RNA metabolic process 14.29% (34/238) 3.59 0.0 0.0
GO:0090304 nucleic acid metabolic process 14.29% (34/238) 3.0 0.0 0.0
GO:0008168 methyltransferase activity 9.24% (22/238) 3.97 0.0 0.0
GO:0016741 transferase activity, transferring one-carbon groups 9.24% (22/238) 3.86 0.0 0.0
GO:0006396 RNA processing 8.82% (21/238) 4.0 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 15.55% (37/238) 2.43 0.0 0.0
GO:0046483 heterocycle metabolic process 15.55% (37/238) 2.3 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 15.55% (37/238) 2.3 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 15.55% (37/238) 2.26 0.0 0.0
GO:0034470 ncRNA processing 5.88% (14/238) 4.38 0.0 0.0
GO:0008173 RNA methyltransferase activity 4.2% (10/238) 5.22 0.0 0.0
GO:0003723 RNA binding 7.98% (19/238) 3.27 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 15.55% (37/238) 2.0 0.0 0.0
GO:0009451 RNA modification 4.62% (11/238) 4.51 0.0 0.0
GO:0034660 ncRNA metabolic process 5.88% (14/238) 3.71 0.0 0.0
GO:0140098 catalytic activity, acting on RNA 6.3% (15/238) 3.39 0.0 0.0
GO:0001522 pseudouridine synthesis 3.36% (8/238) 4.9 0.0 0.0
GO:0009982 pseudouridine synthase activity 2.94% (7/238) 4.94 0.0 0.0
GO:0003676 nucleic acid binding 12.61% (30/238) 1.82 0.0 0.0
GO:0016072 rRNA metabolic process 2.94% (7/238) 4.78 0.0 0.0
GO:0006364 rRNA processing 2.94% (7/238) 4.78 0.0 0.0
GO:0016866 intramolecular transferase activity 2.94% (7/238) 4.57 0.0 0.0
GO:0008033 tRNA processing 2.94% (7/238) 4.12 0.0 1e-06
GO:0008175 tRNA methyltransferase activity 1.26% (3/238) 6.22 2e-06 2.9e-05
GO:0016853 isomerase activity 3.36% (8/238) 2.99 7e-06 8.5e-05
GO:0043170 macromolecule metabolic process 15.97% (38/238) 1.07 1e-05 0.000113
GO:0032259 methylation 2.1% (5/238) 4.02 1.2e-05 0.000125
GO:0006399 tRNA metabolic process 2.94% (7/238) 3.12 1.5e-05 0.000158
GO:0005488 binding 26.05% (62/238) 0.73 2.4e-05 0.000239
GO:0003674 molecular_function 39.5% (94/238) 0.52 4.4e-05 0.000425
GO:0030684 preribosome 1.26% (3/238) 5.22 4.6e-05 0.000437
GO:0006807 nitrogen compound metabolic process 17.23% (41/238) 0.9 6.4e-05 0.000586
GO:0044237 cellular metabolic process 17.23% (41/238) 0.87 0.000105 0.000933
GO:0044238 primary metabolic process 18.07% (43/238) 0.84 0.000115 0.00099
GO:0031515 tRNA (m1A) methyltransferase complex 0.84% (2/238) 6.22 0.000179 0.001313
GO:0043527 tRNA methyltransferase complex 0.84% (2/238) 6.22 0.000179 0.001313
GO:0030488 tRNA methylation 0.84% (2/238) 6.22 0.000179 0.001313
GO:0034708 methyltransferase complex 0.84% (2/238) 6.22 0.000179 0.001313
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity 0.84% (2/238) 6.22 0.000179 0.001313
GO:0016423 tRNA (guanine) methyltransferase activity 0.84% (2/238) 6.22 0.000179 0.001313
GO:0016740 transferase activity 12.18% (29/238) 1.04 0.00019 0.00136
GO:0071704 organic substance metabolic process 18.07% (43/238) 0.78 0.000283 0.001977
GO:0008152 metabolic process 21.43% (51/238) 0.68 0.00036 0.002454
GO:1990234 transferase complex 1.68% (4/238) 3.52 0.000374 0.002493
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 1.26% (3/238) 4.22 0.00048 0.003123
GO:0008170 N-methyltransferase activity 0.84% (2/238) 5.64 0.000533 0.003394
GO:0003824 catalytic activity 23.11% (55/238) 0.62 0.000598 0.003729
GO:0006400 tRNA modification 1.26% (3/238) 4.1 0.000617 0.003768
GO:0032774 RNA biosynthetic process 2.1% (5/238) 2.81 0.000708 0.004231
GO:0097159 organic cyclic compound binding 15.97% (38/238) 0.77 0.000746 0.004284
GO:1901363 heterocyclic compound binding 15.97% (38/238) 0.77 0.000746 0.004284
GO:0032040 small-subunit processome 0.84% (2/238) 5.22 0.001056 0.00584
GO:0030880 RNA polymerase complex 0.84% (2/238) 5.22 0.001056 0.00584
GO:0006351 transcription, DNA-templated 1.68% (4/238) 3.09 0.001193 0.006241
GO:0097659 nucleic acid-templated transcription 1.68% (4/238) 3.09 0.001193 0.006241
GO:0009987 cellular process 17.65% (42/238) 0.69 0.00116 0.006292
GO:0061695 transferase complex, transferring phosphorus-containing groups 0.84% (2/238) 4.9 0.001745 0.008815
GO:0001510 RNA methylation 0.84% (2/238) 4.9 0.001745 0.008815
GO:0032550 purine ribonucleoside binding 2.52% (6/238) 2.04 0.003514 0.01492
GO:0032549 ribonucleoside binding 2.52% (6/238) 2.04 0.003514 0.01492
GO:0019001 guanyl nucleotide binding 2.52% (6/238) 2.04 0.003514 0.01492
GO:0005525 GTP binding 2.52% (6/238) 2.04 0.003514 0.01492
GO:0001883 purine nucleoside binding 2.52% (6/238) 2.04 0.003514 0.01492
GO:0001882 nucleoside binding 2.52% (6/238) 2.04 0.003514 0.01492
GO:0032561 guanyl ribonucleotide binding 2.52% (6/238) 2.04 0.003514 0.01492
GO:0016763 transferase activity, transferring pentosyl groups 0.84% (2/238) 4.41 0.0036 0.015069
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 1.26% (3/238) 3.35 0.003041 0.0151
GO:1902494 catalytic complex 2.1% (5/238) 2.33 0.003164 0.015453
GO:0034062 5'-3' RNA polymerase activity 1.26% (3/238) 3.28 0.003462 0.016363
GO:0097747 RNA polymerase activity 1.26% (3/238) 3.28 0.003462 0.016363
GO:0140101 catalytic activity, acting on a tRNA 1.68% (4/238) 2.52 0.005165 0.021314
GO:0005515 protein binding 7.98% (19/238) 0.9 0.006966 0.02835
GO:0043414 macromolecule methylation 0.84% (2/238) 3.9 0.007512 0.030152
GO:0042254 ribosome biogenesis 0.84% (2/238) 3.76 0.009101 0.035554
GO:0022613 ribonucleoprotein complex biogenesis 0.84% (2/238) 3.76 0.009101 0.035554
GO:1901269 lipooligosaccharide metabolic process 0.42% (1/238) 6.22 0.013415 0.040522
GO:0019213 deacetylase activity 0.42% (1/238) 6.22 0.013415 0.040522
GO:0019206 nucleoside kinase activity 0.42% (1/238) 6.22 0.013415 0.040522
GO:0016426 tRNA (adenine) methyltransferase activity 0.42% (1/238) 6.22 0.013415 0.040522
GO:0016429 tRNA (adenine-N1-)-methyltransferase activity 0.42% (1/238) 6.22 0.013415 0.040522
GO:0046493 lipid A metabolic process 0.42% (1/238) 6.22 0.013415 0.040522
GO:0019856 pyrimidine nucleobase biosynthetic process 0.42% (1/238) 6.22 0.013415 0.040522
GO:0004797 thymidine kinase activity 0.42% (1/238) 6.22 0.013415 0.040522
GO:0019136 deoxynucleoside kinase activity 0.42% (1/238) 6.22 0.013415 0.040522
GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity 0.42% (1/238) 6.22 0.013415 0.040522
GO:0009245 lipid A biosynthetic process 0.42% (1/238) 6.22 0.013415 0.040522
GO:0000178 exosome (RNase complex) 0.42% (1/238) 6.22 0.013415 0.040522
GO:0031418 L-ascorbic acid binding 0.42% (1/238) 6.22 0.013415 0.040522
GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors 0.42% (1/238) 6.22 0.013415 0.040522
GO:0004749 ribose phosphate diphosphokinase activity 0.42% (1/238) 6.22 0.013415 0.040522
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process 0.42% (1/238) 6.22 0.013415 0.040522
GO:0004590 orotidine-5'-phosphate decarboxylase activity 0.42% (1/238) 6.22 0.013415 0.040522
GO:0006206 pyrimidine nucleobase metabolic process 0.42% (1/238) 6.22 0.013415 0.040522
GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity 0.42% (1/238) 6.22 0.013415 0.040522
GO:1905354 exoribonuclease complex 0.42% (1/238) 6.22 0.013415 0.040522
GO:1901271 lipooligosaccharide biosynthetic process 0.42% (1/238) 6.22 0.013415 0.040522
GO:0044085 cellular component biogenesis 0.84% (2/238) 3.64 0.010825 0.041734
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_17 0.031 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_39 0.048 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_183 0.036 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_194 0.032 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_252 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_129 0.028 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_144 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_194 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_248 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_23 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_40 0.033 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_55 0.038 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_131 0.026 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_144 0.037 Archaeplastida Compare
Gingko biloba HCCA Cluster_116 0.022 Archaeplastida Compare
Gingko biloba HCCA Cluster_151 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_39 0.031 Archaeplastida Compare
Zea mays HCCA Cluster_56 0.041 Archaeplastida Compare
Zea mays HCCA Cluster_70 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_103 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_180 0.029 Archaeplastida Compare
Zea mays HCCA Cluster_199 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_216 0.034 Archaeplastida Compare
Zea mays HCCA Cluster_276 0.023 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_16 0.05 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_24 0.023 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_65 0.022 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_85 0.025 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_91 0.023 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_110 0.058 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_160 0.04 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_19 0.034 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_20 0.038 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_95 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_114 0.046 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_167 0.028 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_244 0.039 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_272 0.022 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_292 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_84 0.036 Archaeplastida Compare
Picea abies HCCA Cluster_486 0.027 Archaeplastida Compare
Oryza sativa HCCA Cluster_94 0.046 Archaeplastida Compare
Oryza sativa HCCA Cluster_114 0.025 Archaeplastida Compare
Oryza sativa HCCA Cluster_200 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_273 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_347 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_137 0.023 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_26 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_32 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_105 0.058 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_209 0.036 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_211 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_253 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_44 0.025 Archaeplastida Compare
Vitis vinifera HCCA Cluster_52 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_60 0.023 Archaeplastida Compare
Vitis vinifera HCCA Cluster_72 0.023 Archaeplastida Compare
Vitis vinifera HCCA Cluster_121 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_172 0.03 Archaeplastida Compare
Vitis vinifera HCCA Cluster_196 0.021 Archaeplastida Compare
Sequences (238) (download table)

InterPro Domains

GO Terms

Family Terms