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  5. AMTR_s00047p00199030

AMTR_s00047p00199030 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00047.126

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.YABBY transcription factor


Gene families : OG0000890 (Archaeplastida) Phylogenetic Tree(s): OG0000890_tree ,
OG_05_0010937 (LandPlants) Phylogenetic Tree(s): OG_05_0010937_tree ,
OG_06_0010891 (SeedPlants) Phylogenetic Tree(s): OG_06_0010891_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00047p00199030
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AT1G23420 INO Plant-specific transcription factor YABBY family protein 0.07 Archaeplastida
AT1G69180 CRC Plant-specific transcription factor YABBY family protein 0.03 Archaeplastida
AT2G26580 YAB5 plant-specific transcription factor YABBY family protein 0.03 Archaeplastida
AT2G45190 AFO, YAB1, FIL Plant-specific transcription factor YABBY family protein 0.03 Archaeplastida
GSVIVT01012246001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.05 Archaeplastida
Gb_22423 No alias transcription factor (YABBY) 0.02 Archaeplastida
LOC_Os03g44710.2 No alias transcription factor (YABBY) 0.03 Archaeplastida
LOC_Os07g06620.2 No alias transcription factor (YABBY) 0.03 Archaeplastida
LOC_Os10g36420.1 No alias transcription factor (YABBY) 0.06 Archaeplastida
LOC_Os12g42610.1 No alias transcription factor (YABBY) 0.04 Archaeplastida
Solyc01g010240.3.1 No alias transcription factor (YABBY) 0.05 Archaeplastida
Solyc05g012050.4.1 No alias transcription factor (YABBY) 0.03 Archaeplastida
Solyc06g073920.3.1 No alias transcription factor (YABBY) 0.07 Archaeplastida
Solyc07g008180.4.1 No alias transcription factor (YABBY) 0.03 Archaeplastida
Zm00001e000845_P005 No alias transcription factor (YABBY) 0.02 Archaeplastida
Zm00001e003268_P003 No alias transcription factor (YABBY) 0.05 Archaeplastida
Zm00001e004396_P001 No alias transcription factor (YABBY) 0.03 Archaeplastida
Zm00001e012387_P001 No alias transcription factor (YABBY) 0.07 Archaeplastida
Zm00001e012388_P001 No alias transcription factor (YABBY) 0.03 Archaeplastida
Zm00001e017951_P002 No alias transcription factor (YABBY) 0.05 Archaeplastida
Zm00001e032845_P002 No alias transcription factor (YABBY) 0.05 Archaeplastida
Zm00001e038717_P002 No alias transcription factor (YABBY) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Neighborhood
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
BP GO:0008610 lipid biosynthetic process IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0030674 protein binding, bridging IEP Neighborhood
BP GO:0032787 monocarboxylic acid metabolic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
MF GO:0051015 actin filament binding IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
InterPro domains Description Start Stop
IPR006780 YABBY 7 146
No external refs found!