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  5. AMTR_s00048p00035310

AMTR_s00048p00035310 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00048.9

No description available


Gene families : OG0000529 (Archaeplastida) Phylogenetic Tree(s): OG0000529_tree ,
OG_05_0000912 (LandPlants) Phylogenetic Tree(s): OG_05_0000912_tree ,
OG_06_0007834 (SeedPlants) Phylogenetic Tree(s): OG_06_0007834_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00048p00035310
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AT1G48090 No alias calcium-dependent lipid-binding family protein 0.09 Archaeplastida
Cpa|evm.model.tig00000042.91 No alias No description available 0.03 Archaeplastida
Cpa|evm.model.tig00000459.51 No alias No description available 0.01 Archaeplastida
Cpa|evm.model.tig00000551.1 No alias No description available 0.01 Archaeplastida
Cpa|evm.model.tig00000615.50 No alias No description available 0.03 Archaeplastida
Cpa|evm.model.tig00020554.153 No alias No description available 0.02 Archaeplastida
Cre17.g728250 No alias No description available 0.03 Archaeplastida
GSVIVT01013268001 No alias No description available 0.05 Archaeplastida
GSVIVT01013270001 No alias No description available 0.04 Archaeplastida
GSVIVT01017643001 No alias No description available 0.07 Archaeplastida
GSVIVT01019371001 No alias No description available 0.04 Archaeplastida
Gb_15429 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_35998 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os02g27110.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os02g27130.1 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10426328g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_10428265g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_10432463g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10436895g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_119498g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_267190g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_295252g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_36612g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_58863g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_901094g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Mp3g08780.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c9_20320V3.1 No alias calcium-dependent lipid-binding family protein 0.05 Archaeplastida
Smo444980 No alias No description available 0.03 Archaeplastida
Solyc09g009350.2.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc09g009370.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc11g045140.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e029204_P001 No alias no hits & (original description: none) 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008381 mechanosensitive ion channel activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR026854 VPS13_N 3 115
IPR009543 SHR-BD 3335 3499
IPR009291 Vps62 1993 2124
IPR009291 Vps62 4241 4306
IPR009291 Vps62 2221 2419
No external refs found!