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  5. AMTR_s00048p00062300

AMTR_s00048p00062300 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00048.24

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL9 component


Gene families : OG0002651 (Archaeplastida) Phylogenetic Tree(s): OG0002651_tree ,
OG_05_0002585 (LandPlants) Phylogenetic Tree(s): OG_05_0002585_tree ,
OG_06_0002821 (SeedPlants) Phylogenetic Tree(s): OG_06_0002821_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00048p00062300
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AT1G33120 No alias Ribosomal protein L6 family 0.13 Archaeplastida
AT1G33140 PGY2 Ribosomal protein L6 family 0.14 Archaeplastida
AT4G10450 No alias Ribosomal protein L6 family 0.05 Archaeplastida
Cpa|evm.model.tig00001532.12 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
Cre12.g494050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
GSVIVT01016795001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
GSVIVT01038670001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
LOC_Os02g01332.1 No alias component RPL9 of LSU proteome component 0.07 Archaeplastida
LOC_Os09g31180.1 No alias component RPL9 of LSU proteome component 0.15 Archaeplastida
MA_38141g0010 No alias component RPL9 of LSU proteome component 0.09 Archaeplastida
Mp4g24070.1 No alias component RPL9 of LSU proteome component 0.2 Archaeplastida
Pp3c10_8500V3.1 No alias Ribosomal protein L6 family 0.11 Archaeplastida
Pp3c14_8600V3.1 No alias Ribosomal protein L6 family 0.14 Archaeplastida
Pp3c16_20070V3.1 No alias Ribosomal protein L6 family 0.07 Archaeplastida
Pp3c27_8190V3.1 No alias Ribosomal protein L6 family 0.16 Archaeplastida
Smo269009 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
Solyc06g073310.3.1 No alias component RPL9 of LSU proteome component 0.17 Archaeplastida
Solyc08g014550.3.1 No alias component RPL9 of LSU proteome component 0.13 Archaeplastida
Solyc12g096700.2.1 No alias component RPL9 of LSU proteome component 0.19 Archaeplastida
Zm00001e025404_P001 No alias component RPL9 of LSU proteome component 0.07 Archaeplastida
Zm00001e029810_P003 No alias component RPL9 of LSU proteome component 0.14 Archaeplastida
Zm00001e036699_P002 No alias component RPL9 of LSU proteome component 0.15 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Neighborhood
MF GO:0004129 cytochrome-c oxidase activity IEP Neighborhood
MF GO:0004659 prenyltransferase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
MF GO:0005544 calcium-dependent phospholipid binding IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Neighborhood
CC GO:0005956 protein kinase CK2 complex IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006621 protein retention in ER lumen IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
MF GO:0015002 heme-copper terminal oxidase activity IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Neighborhood
BP GO:0015986 ATP synthesis coupled proton transport IEP Neighborhood
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Neighborhood
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
BP GO:0032507 maintenance of protein location in cell IEP Neighborhood
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
BP GO:0045185 maintenance of protein location IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0046923 ER retention sequence binding IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051651 maintenance of location in cell IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072595 maintenance of protein localization in organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 12 86
IPR020040 Ribosomal_L6_a/b-dom 98 177
No external refs found!