Cre03.g156150

Description : DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana

Gene families : OG0000482 (Archaeplastida) Phylogenetic Tree(s): OG0000482_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre03.g156150
Cluster	HCCA: Cluster_60

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00225030	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.09	Archaeplastida
AMTR_s00002p00261540	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa...	0.02	Archaeplastida
AMTR_s00007p00266810	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana	0.03	Archaeplastida
AMTR_s00062p00159540	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana	0.04	Archaeplastida
AMTR_s00068p00202400	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa...	0.01	Archaeplastida
AT2G40700	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.16	Archaeplastida
AT3G18600	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.1	Archaeplastida
AT5G05450	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.05	Archaeplastida
AT5G54910	No alias	DEA(D/H)-box RNA helicase family protein	0.03	Archaeplastida
AT5G65900	No alias	DEA(D/H)-box RNA helicase family protein	0.02	Archaeplastida
Cpa\|evm.model.tig00000441.12	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Arabidopsis thaliana	0.01	Archaeplastida
Cpa\|evm.model.tig00000615.43	No alias	DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana	0.04	Archaeplastida
Cpa\|evm.model.tig00020684.38	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa...	0.05	Archaeplastida
GSVIVT01008218001	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.09	Archaeplastida
GSVIVT01015034001	No alias	DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana	0.05	Archaeplastida
GSVIVT01032750001	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana	0.08	Archaeplastida
GSVIVT01037636001	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana	0.12	Archaeplastida
Gb_06702	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.03	Archaeplastida
Gb_10018	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis...	0.02	Archaeplastida
Gb_12810	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa...	0.08	Archaeplastida
Gb_16157	No alias	DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa...	0.07	Archaeplastida
LOC_Os01g07080.1	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa...	0.11	Archaeplastida
LOC_Os03g58810.1	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.16	Archaeplastida
LOC_Os05g01990.1	No alias	DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa...	0.03	Archaeplastida
LOC_Os07g33340.1	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sativa...	0.07	Archaeplastida
MA_10334041g0020	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis...	0.04	Archaeplastida
MA_7914832g0010	No alias	No annotation	0.01	Archaeplastida
Mp5g04780.1	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis...	0.02	Archaeplastida
Mp6g05260.1	No alias	DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa...	0.19	Archaeplastida
Mp7g12890.1	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.24	Archaeplastida
Mp8g10290.1	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis...	0.15	Archaeplastida
Pp3c11_510V3.1	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.03	Archaeplastida
Pp3c17_13450V3.1	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.1	Archaeplastida
Pp3c1_22540V3.1	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.14	Archaeplastida
Pp3c4_14810V3.1	No alias	DEA(D/H)-box RNA helicase family protein	0.18	Archaeplastida
Smo104808	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.05	Archaeplastida
Smo230685	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.02	Archaeplastida
Solyc02g078880.4.1	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis...	0.05	Archaeplastida
Solyc03g114370.4.1	No alias	no hits & (original description: none)	0.25	Archaeplastida
Solyc07g064520.3.1	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis...	0.25	Archaeplastida
Zm00001e010480_P001	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sativa...	0.12	Archaeplastida
Zm00001e011842_P001	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.17	Archaeplastida
Zm00001e016823_P002	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa...	0.1	Archaeplastida
Zm00001e027024_P001	No alias	DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa...	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005730	nucleolus	IEP	Neighborhood
CC	GO:0005732	small nucleolar ribonucleoprotein complex	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
MF	GO:0008134	transcription factor binding	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0017150	tRNA dihydrouridine synthase activity	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
BP	GO:0030490	maturation of SSU-rRNA	IEP	Neighborhood
MF	GO:0030515	snoRNA binding	IEP	Neighborhood
CC	GO:0030684	preribosome	IEP	Neighborhood
CC	GO:0030688	preribosome, small subunit precursor	IEP	Neighborhood
CC	GO:0032040	small-subunit processome	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Neighborhood
CC	GO:0034457	Mpp10 complex	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043228	non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044452	nucleolar part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood
MF	GO:0097747	RNA polymerase activity	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	94	263
IPR001650	Helicase_C	308	410
IPR025313	DUF4217	453	511

External Links

No external refs found!

Cre03.g156150

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation