Cre03.g165750

Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol III catalytic subunits.subunit 1

Gene families : OG0000599 (Archaeplastida) Phylogenetic Tree(s): OG0000599_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre03.g165750
Cluster	HCCA: Cluster_87

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00131p00068700	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	Archaeplastida
AT4G35800	RNA_POL_II_LSRNA_...	RNA polymerase II large subunit	0.02	Archaeplastida
Cpa\|evm.model.tig00000241.15	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.05	Archaeplastida
Cpa\|evm.model.tig00022075.6	No alias	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01008740001	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	Archaeplastida
Gb_33197	No alias	subunit 1 of Pol II RNA polymerase	0.02	Archaeplastida
LOC_Os02g05880.1	No alias	subunit 1 of Pol V RNA polymerase	0.03	Archaeplastida
LOC_Os04g41490.1	No alias	subunit 1 of Pol III RNA polymerase	0.01	Archaeplastida
MA_10436091g0010	No alias	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis...	0.03	Archaeplastida
MA_5690g0010	No alias	subunit 1 of Pol II RNA polymerase	0.01	Archaeplastida
MA_8544g0010	No alias	subunit 1 of Pol II RNA polymerase	0.04	Archaeplastida
Mp4g14340.1	No alias	subunit 1 of Pol II RNA polymerase	0.02	Archaeplastida
Mp7g16790.1	No alias	subunit 1 of Pol III RNA polymerase	0.08	Archaeplastida
Pp3c15_5270V3.1	No alias	nuclear RNA polymerase D1B	0.02	Archaeplastida
Pp3c17_4860V3.1	No alias	nuclear RNA polymerase C1	0.05	Archaeplastida
Pp3c1_32300V3.1	No alias	RNA polymerase II large subunit	0.02	Archaeplastida
Smo442419	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	Archaeplastida
Solyc01g096390.4.1	No alias	subunit 1 of Pol V RNA polymerase	0.02	Archaeplastida
Solyc11g072730.2.1	No alias	subunit 1 of Pol III RNA polymerase	0.02	Archaeplastida
Zm00001e007729_P001	No alias	subunit 1 of Pol III RNA polymerase	0.01	Archaeplastida
Zm00001e025206_P001	No alias	subunit 1 of Pol V RNA polymerase	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Neighborhood
BP	GO:0000160	phosphorelay signal transduction system	IEP	Neighborhood
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
BP	GO:0001510	RNA methylation	IEP	Neighborhood
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0004540	ribonuclease activity	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006813	potassium ion transport	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0008173	RNA methyltransferase activity	IEP	Neighborhood
MF	GO:0008536	Ran GTPase binding	IEP	Neighborhood
MF	GO:0008649	rRNA methyltransferase activity	IEP	Neighborhood
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
MF	GO:0009982	pseudouridine synthase activity	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
MF	GO:0016435	rRNA (guanine) methyltransferase activity	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0017016	Ras GTPase binding	IEP	Neighborhood
BP	GO:0017038	protein import	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
MF	GO:0019899	enzyme binding	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
BP	GO:0031167	rRNA methylation	IEP	Neighborhood
MF	GO:0031267	small GTPase binding	IEP	Neighborhood
BP	GO:0032259	methylation	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
BP	GO:0036265	RNA (guanine-N7)-methylation	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
BP	GO:0045184	establishment of protein localization	IEP	Neighborhood
MF	GO:0050661	NADP binding	IEP	Neighborhood
MF	GO:0051020	GTPase binding	IEP	Neighborhood
BP	GO:0070475	rRNA base methylation	IEP	Neighborhood
BP	GO:0070476	rRNA (guanine-N7)-methylation	IEP	Neighborhood
BP	GO:0071702	organic substance transport	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007080	RNA_pol_Rpb1_1	28	363
IPR007083	RNA_pol_Rpb1_4	730	836
IPR000722	RNA_pol_asu	365	529
IPR007081	RNA_pol_Rpb1_5	843	1420
IPR007066	RNA_pol_Rpb1_3	534	705

External Links

No external refs found!

Cre03.g165750

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation