Coexpression cluster: Cluster_87 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016070 RNA metabolic process 15.15% (10/66) 3.68 0.0 1e-06
GO:0090304 nucleic acid metabolic process 15.15% (10/66) 3.08 0.0 1.9e-05
GO:0003676 nucleic acid binding 19.7% (13/66) 2.47 0.0 2.4e-05
GO:0006139 nucleobase-containing compound metabolic process 16.67% (11/66) 2.53 3e-06 0.0001
GO:0046483 heterocycle metabolic process 16.67% (11/66) 2.4 6e-06 0.000159
GO:1901360 organic cyclic compound metabolic process 16.67% (11/66) 2.36 8e-06 0.000169
GO:0009451 RNA modification 6.06% (4/66) 4.9 9e-06 0.000176
GO:0006725 cellular aromatic compound metabolic process 16.67% (11/66) 2.4 6e-06 0.000184
GO:0008649 rRNA methyltransferase activity 3.03% (2/66) 8.07 1.4e-05 0.000204
GO:0140102 catalytic activity, acting on a rRNA 3.03% (2/66) 8.07 1.4e-05 0.000204
GO:0006396 RNA processing 7.58% (5/66) 3.78 3.2e-05 0.000433
GO:0034470 ncRNA processing 6.06% (4/66) 4.43 3.5e-05 0.000442
GO:0034641 cellular nitrogen compound metabolic process 16.67% (11/66) 2.1 4.2e-05 0.000488
GO:0140098 catalytic activity, acting on RNA 7.58% (5/66) 3.65 4.8e-05 0.000519
GO:0034660 ncRNA metabolic process 6.06% (4/66) 3.75 0.000223 0.002234
GO:0097659 nucleic acid-templated transcription 4.55% (3/66) 4.53 0.000296 0.002608
GO:0006351 transcription, DNA-templated 4.55% (3/66) 4.53 0.000296 0.002608
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 3.03% (2/66) 5.49 0.000878 0.007319
GO:0004518 nuclease activity 4.55% (3/66) 3.95 0.000954 0.007532
GO:0032774 RNA biosynthetic process 4.55% (3/66) 3.93 0.001009 0.007565
GO:0016779 nucleotidyltransferase activity 4.55% (3/66) 3.75 0.001446 0.010331
GO:0004527 exonuclease activity 3.03% (2/66) 5.07 0.001582 0.010783
GO:0016072 rRNA metabolic process 3.03% (2/66) 4.82 0.002238 0.013425
GO:0006364 rRNA processing 3.03% (2/66) 4.82 0.002238 0.013425
GO:0001522 pseudouridine synthesis 3.03% (2/66) 4.75 0.00248 0.013779
GO:0008173 RNA methyltransferase activity 3.03% (2/66) 4.75 0.00248 0.013779
GO:0097159 organic cyclic compound binding 21.21% (14/66) 1.18 0.00273 0.014119
GO:1901363 heterocyclic compound binding 21.21% (14/66) 1.18 0.00273 0.014119
GO:0003723 RNA binding 6.06% (4/66) 2.87 0.00219 0.014282
GO:0000154 rRNA modification 1.52% (1/66) 8.07 0.00372 0.014308
GO:0070476 rRNA (guanine-N7)-methylation 1.52% (1/66) 8.07 0.00372 0.014308
GO:0070475 rRNA base methylation 1.52% (1/66) 8.07 0.00372 0.014308
GO:0036265 RNA (guanine-N7)-methylation 1.52% (1/66) 8.07 0.00372 0.014308
GO:0031167 rRNA methylation 1.52% (1/66) 8.07 0.00372 0.014308
GO:0016435 rRNA (guanine) methyltransferase activity 1.52% (1/66) 8.07 0.00372 0.014308
GO:0004000 adenosine deaminase activity 1.52% (1/66) 8.07 0.00372 0.014308
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 3.03% (2/66) 4.61 0.003001 0.015005
GO:0034062 5'-3' RNA polymerase activity 3.03% (2/66) 4.55 0.003279 0.01537
GO:0097747 RNA polymerase activity 3.03% (2/66) 4.55 0.003279 0.01537
GO:0008033 tRNA processing 3.03% (2/66) 4.16 0.005544 0.02079
GO:0008168 methyltransferase activity 4.55% (3/66) 2.94 0.007036 0.025743
GO:0016741 transferase activity, transferring one-carbon groups 4.55% (3/66) 2.84 0.008606 0.030734
GO:0005488 binding 27.27% (18/66) 0.8 0.011103 0.038731
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_149 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_192 0.03 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_76 0.025 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_131 0.027 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_194 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_103 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_216 0.019 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_22 0.026 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_110 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_274 0.025 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_284 0.023 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_293 0.028 Archaeplastida Compare
Picea abies HCCA Cluster_256 0.024 Archaeplastida Compare
Picea abies HCCA Cluster_520 0.024 Archaeplastida Compare
Oryza sativa HCCA Cluster_141 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_105 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_202 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_197 0.025 Archaeplastida Compare
Vitis vinifera HCCA Cluster_220 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_73 0.024 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_81 0.023 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_134 0.028 Archaeplastida Compare
Sequences (66) (download table)

InterPro Domains

GO Terms

Family Terms