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  5. Cre03.g188550

Cre03.g188550


Description : DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa subsp. japonica


Gene families : OG0000482 (Archaeplastida) Phylogenetic Tree(s): OG0000482_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g188550
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00225030 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.05 Archaeplastida
AMTR_s00002p00261540 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... 0.03 Archaeplastida
AMTR_s00007p00266810 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00062p00159540 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT2G40700 No alias P-loop containing nucleoside triphosphate hydrolases... 0.14 Archaeplastida
AT3G18600 No alias P-loop containing nucleoside triphosphate hydrolases... 0.08 Archaeplastida
AT5G05450 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 Archaeplastida
AT5G65900 No alias DEA(D/H)-box RNA helicase family protein 0.02 Archaeplastida
Cpa|evm.model.tig00000615.43 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana 0.06 Archaeplastida
Cpa|evm.model.tig00020684.38 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... 0.04 Archaeplastida
GSVIVT01008218001 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.06 Archaeplastida
GSVIVT01015034001 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01032750001 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01037636001 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana 0.09 Archaeplastida
Gb_10018 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis... 0.02 Archaeplastida
Gb_12810 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... 0.05 Archaeplastida
Gb_16157 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.05 Archaeplastida
LOC_Os01g07080.1 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... 0.09 Archaeplastida
LOC_Os03g58810.1 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.11 Archaeplastida
LOC_Os07g33340.1 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sativa... 0.09 Archaeplastida
MA_10334041g0020 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis... 0.05 Archaeplastida
Mp5g04780.1 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis... 0.01 Archaeplastida
Mp6g05260.1 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.15 Archaeplastida
Mp7g12890.1 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.16 Archaeplastida
Mp8g10290.1 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis... 0.12 Archaeplastida
Pp3c17_13450V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.09 Archaeplastida
Pp3c1_22540V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.1 Archaeplastida
Pp3c4_14810V3.1 No alias DEA(D/H)-box RNA helicase family protein 0.13 Archaeplastida
Smo104808 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.05 Archaeplastida
Smo123861 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana 0.02 Archaeplastida
Smo230685 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.02 Archaeplastida
Solyc02g078880.4.1 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis... 0.03 Archaeplastida
Solyc03g114370.4.1 No alias no hits & (original description: none) 0.15 Archaeplastida
Solyc07g064520.3.1 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis... 0.15 Archaeplastida
Zm00001e010480_P001 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sativa... 0.1 Archaeplastida
Zm00001e011842_P001 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.13 Archaeplastida
Zm00001e016823_P002 No alias DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... 0.07 Archaeplastida
Zm00001e027024_P001 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Neighborhood
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR025313 DUF4217 814 874
IPR001650 Helicase_C 608 732
IPR011545 DEAD/DEAH_box_helicase_dom 292 534
No external refs found!