Cre04.g212700

Description : RNA biosynthesis.transcriptional activation.SBP transcription factor

Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre04.g212700

Target	Alias	Description	ECC score	Gene Family Method
Cre01.g012200	No alias	RNA biosynthesis.transcriptional activation.SBP...	0.01	Archaeplastida
Cre01.g070932	No alias	RNA biosynthesis.transcriptional activation.SBP...	0.02	Archaeplastida
Cre02.g085150	No alias	RNA biosynthesis.transcriptional activation.SBP...	0.02	Archaeplastida
Cre05.g233551	No alias	RNA biosynthesis.transcriptional activation.SBP...	0.08	Archaeplastida
Cre09.g390023	No alias	RNA biosynthesis.transcriptional activation.SBP...	0.04	Archaeplastida
Cre16.g673250	No alias	RNA biosynthesis.transcriptional activation.SBP...	0.01	Archaeplastida
Cre16.g686100	No alias	RNA biosynthesis.transcriptional activation.SBP...	0.05	Archaeplastida
Cre17.g698233	No alias	RNA biosynthesis.transcriptional activation.SBP...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0007165	signal transduction	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
BP	GO:0009117	nucleotide metabolic process	IEP	Neighborhood
BP	GO:0009165	nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0009187	cyclic nucleotide metabolic process	IEP	Neighborhood
BP	GO:0009190	cyclic nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
MF	GO:0016829	lyase activity	IEP	Neighborhood
MF	GO:0016849	phosphorus-oxygen lyase activity	IEP	Neighborhood
BP	GO:0018130	heterocycle biosynthetic process	IEP	Neighborhood
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Neighborhood
BP	GO:0019637	organophosphate metabolic process	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0035556	intracellular signal transduction	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
BP	GO:0090407	organophosphate biosynthetic process	IEP	Neighborhood
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	Neighborhood
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004333	SBP_dom	46	119

External Links

No external refs found!

Cre04.g212700

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation