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  5. Cre04.g217921

Cre04.g217921


Description : Vesicle trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.cargo adaptor F-subcomplex.beta subunit


Gene families : OG0003156 (Archaeplastida) Phylogenetic Tree(s): OG0003156_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre04.g217921
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00238440 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.06 Archaeplastida
AT4G31480 No alias Coatomer, beta subunit 0.09 Archaeplastida
AT4G31490 No alias Coatomer, beta subunit 0.09 Archaeplastida
Cpa|evm.model.tig00020553.156 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.05 Archaeplastida
GSVIVT01035511001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.1 Archaeplastida
Gb_03760 No alias subunit beta of cargo adaptor F-subcomplex 0.09 Archaeplastida
Gb_23100 No alias subunit beta of cargo adaptor F-subcomplex 0.06 Archaeplastida
LOC_Os01g17430.1 No alias subunit beta of cargo adaptor F-subcomplex 0.1 Archaeplastida
LOC_Os11g07280.1 No alias subunit beta of cargo adaptor F-subcomplex 0.08 Archaeplastida
MA_10431517g0010 No alias subunit beta of cargo adaptor F-subcomplex 0.06 Archaeplastida
MA_10432097g0020 No alias subunit beta of cargo adaptor F-subcomplex 0.07 Archaeplastida
MA_230138g0010 No alias subunit beta of cargo adaptor F-subcomplex 0.08 Archaeplastida
Mp5g08450.1 No alias subunit beta of cargo adaptor F-subcomplex 0.08 Archaeplastida
Pp3c25_10770V3.1 No alias Coatomer, beta subunit 0.12 Archaeplastida
Pp3c6_720V3.1 No alias Coatomer, beta subunit 0.12 Archaeplastida
Pp3c7_8430V3.1 No alias Coatomer, beta subunit 0.1 Archaeplastida
Smo160340 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 Archaeplastida
Solyc01g007150.3.1 No alias subunit beta of cargo adaptor F-subcomplex 0.07 Archaeplastida
Solyc10g081920.2.1 No alias subunit beta of cargo adaptor F-subcomplex 0.07 Archaeplastida
Zm00001e009041_P001 No alias subunit beta of cargo adaptor F-subcomplex 0.09 Archaeplastida
Zm00001e017416_P001 No alias subunit beta of cargo adaptor F-subcomplex 0.13 Archaeplastida
Zm00001e025465_P001 No alias subunit beta of cargo adaptor F-subcomplex 0.11 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005801 cis-Golgi network IEP Neighborhood
CC GO:0005856 cytoskeleton IEP Neighborhood
BP GO:0006621 protein retention in ER lumen IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Neighborhood
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Neighborhood
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
CC GO:0017119 Golgi transport complex IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030119 AP-type membrane coat adaptor complex IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030126 COPI vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
CC GO:0030131 clathrin adaptor complex IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
BP GO:0032507 maintenance of protein location in cell IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Neighborhood
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0045185 maintenance of protein location IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0046834 lipid phosphorylation IEP Neighborhood
BP GO:0046854 phosphatidylinositol phosphorylation IEP Neighborhood
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Neighborhood
MF GO:0046923 ER retention sequence binding IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051651 maintenance of location in cell IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
BP GO:0072595 maintenance of protein localization in organelle IEP Neighborhood
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Neighborhood
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
InterPro domains Description Start Stop
IPR011710 Coatomer_bsu_C 676 814
IPR002553 Clathrin/coatomer_adapt-like_N 18 470
IPR029446 COPB1_appendage_platform_dom 820 953
No external refs found!