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  5. Cre04.g227750

Cre04.g227750


Description : DNA damage response.DNA repair mechanisms.homologous recombination repair (HR).auxiliary protein (COM1)


Gene families : OG0007427 (Archaeplastida) Phylogenetic Tree(s): OG0007427_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre04.g227750
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00213820 evm_27.TU.AmTr_v1... DNA damage response.DNA repair mechanisms.homologous... 0.02 Archaeplastida
AT3G52115 COM1, GR1, ATGR1, ATCOM1 gamma response gene 1 0.02 Archaeplastida
Gb_33421 No alias ssDNA endonuclease (COM1/SAE2). homologous recombination... 0.03 Archaeplastida
Pp3c16_2140V3.1 No alias gamma response gene 1 0.02 Archaeplastida
Smo420691 No alias DNA damage response.DNA repair mechanisms.homologous... 0.01 Archaeplastida
Solyc01g086930.4.1 No alias ssDNA endonuclease (COM1/SAE2). homologous recombination... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP Neighborhood
BP GO:0000725 recombinational repair IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0008156 negative regulation of DNA replication IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
BP GO:0045005 DNA-dependent DNA replication maintenance of fidelity IEP Neighborhood
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0048478 replication fork protection IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051053 negative regulation of DNA metabolic process IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR013882 Ctp1_C 1684 1806
No external refs found!