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Description : Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana
Gene families : OG0000652 (Archaeplastida) Phylogenetic Tree(s): OG0000652_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre06.g263800 | |
| Cluster | HCCA: Cluster_22 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00017p00239150 | evm_27.TU.AmTr_v1... | Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana | 0.01 | Archaeplastida | |
| AMTR_s00025p00188660 | evm_27.TU.AmTr_v1... | RNA biosynthesis.RNA polymerase II-dependent... | 0.02 | Archaeplastida | |
| AMTR_s00119p00113940 | evm_27.TU.AmTr_v1... | No description available | 0.01 | Archaeplastida | |
| AT1G16800 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.04 | Archaeplastida | |
| AT2G19120 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.03 | Archaeplastida | |
| GSVIVT01014677001 | No alias | Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana | 0.03 | Archaeplastida | |
| GSVIVT01014679001 | No alias | Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana | 0.06 | Archaeplastida | |
| GSVIVT01029557001 | No alias | RNA biosynthesis.RNA polymerase II-dependent... | 0.02 | Archaeplastida | |
| Mp5g10130.1 | No alias | Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... | 0.02 | Archaeplastida | |
| Pp3c6_5360V3.1 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.02 | Archaeplastida | |
| Smo444379 | No alias | RNA biosynthesis.RNA polymerase II-dependent... | 0.04 | Archaeplastida | |
| Solyc01g104640.3.1 | No alias | no hits & (original description: none) | 0.04 | Archaeplastida | |
| Solyc03g124010.3.1 | No alias | helicase (SEN1) | 0.01 | Archaeplastida | |
| Zm00001e012042_P001 | No alias | Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Neighborhood |
| MF | GO:0004749 | ribose phosphate diphosphokinase activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005515 | protein binding | IEP | Neighborhood |
| CC | GO:0005634 | nucleus | IEP | Neighborhood |
| CC | GO:0005730 | nucleolus | IEP | Neighborhood |
| CC | GO:0005732 | small nucleolar ribonucleoprotein complex | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| MF | GO:0008134 | transcription factor binding | IEP | Neighborhood |
| BP | GO:0009451 | RNA modification | IEP | Neighborhood |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
| MF | GO:0016778 | diphosphotransferase activity | IEP | Neighborhood |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Neighborhood |
| MF | GO:0016853 | isomerase activity | IEP | Neighborhood |
| MF | GO:0016866 | intramolecular transferase activity | IEP | Neighborhood |
| MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Neighborhood |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
| CC | GO:0030684 | preribosome | IEP | Neighborhood |
| CC | GO:0030688 | preribosome, small subunit precursor | IEP | Neighborhood |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Neighborhood |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Neighborhood |
| CC | GO:0034457 | Mpp10 complex | IEP | Neighborhood |
| BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
| BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044428 | nuclear part | IEP | Neighborhood |
| CC | GO:0044452 | nucleolar part | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Neighborhood |
| MF | GO:0097747 | RNA polymerase activity | IEP | Neighborhood |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |