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  5. Cre06.g275100

Cre06.g275100


Description : RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA chromatin transcription factor


Gene families : OG0003954 (Archaeplastida) Phylogenetic Tree(s): OG0003954_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre06.g275100
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00090110 evm_27.TU.AmTr_v1... RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.07 Archaeplastida
AT1G48920 PARL1, ATNUC-L1, NUC-L1 nucleolin like 1 0.07 Archaeplastida
GSVIVT01012042001 No alias RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.06 Archaeplastida
Gb_32672 No alias rDNA chromatin transcription factor (NCL) 0.05 Archaeplastida
LOC_Os04g52960.1 No alias rDNA chromatin transcription factor (NCL) 0.07 Archaeplastida
LOC_Os08g09350.1 No alias rDNA chromatin transcription factor (NCL) 0.05 Archaeplastida
MA_10433238g0010 No alias rDNA chromatin transcription factor (NCL) 0.01 Archaeplastida
MA_11380g0030 No alias rDNA chromatin transcription factor (NCL) 0.03 Archaeplastida
Pp3c12_23930V3.1 No alias nucleolin like 2 0.08 Archaeplastida
Pp3c1_36300V3.1 No alias nucleolin like 2 0.06 Archaeplastida
Pp3c4_1560V3.1 No alias nucleolin like 2 0.05 Archaeplastida
Smo234317 No alias RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.05 Archaeplastida
Solyc02g014310.4.1 No alias rDNA chromatin transcription factor (NCL) 0.16 Archaeplastida
Zm00001e004617_P003 No alias rDNA chromatin transcription factor (NCL) 0.03 Archaeplastida
Zm00001e021609_P004 No alias rDNA chromatin transcription factor (NCL) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 365 416
IPR000504 RRM_dom 249 318
No external refs found!