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  5. Cre06.g278239

Cre06.g278239


Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP factors.SR30/34 splicing factor


Gene families : OG0001375 (Archaeplastida) Phylogenetic Tree(s): OG0001375_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre06.g278239
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
AT1G02840 At-SR34, SRP34,... RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 Archaeplastida
AT4G02430 SR34b, At-SR34b RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 Archaeplastida
Cpa|evm.model.tig00000857.20 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 Archaeplastida
GSVIVT01027997001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.01 Archaeplastida
GSVIVT01038636001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.02 Archaeplastida
LOC_Os01g21420.1 No alias SR30/34 RNA splicing factor 0.03 Archaeplastida
LOC_Os03g22380.1 No alias SR30/34 RNA splicing factor 0.03 Archaeplastida
LOC_Os07g47630.1 No alias SR30/34 RNA splicing factor 0.02 Archaeplastida
MA_11621g0010 No alias SR30/34 RNA splicing factor 0.01 Archaeplastida
Pp3c1_35700V3.1 No alias SER/ARG-rich protein 34A 0.04 Archaeplastida
Pp3c2_2470V3.1 No alias SER/ARG-rich protein 34A 0.03 Archaeplastida
Solyc03g082380.4.1 No alias SR30/34 RNA splicing factor 0.02 Archaeplastida
Solyc09g075090.1.1 No alias SR30/34 RNA splicing factor 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Neighborhood
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0008509 anion transmembrane transporter activity IEP Neighborhood
MF GO:0008514 organic anion transmembrane transporter activity IEP Neighborhood
MF GO:0008521 acetyl-CoA transmembrane transporter activity IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
MF GO:0015215 nucleotide transmembrane transporter activity IEP Neighborhood
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Neighborhood
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
MF GO:0042887 amide transmembrane transporter activity IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
MF GO:0051184 cofactor transmembrane transporter activity IEP Neighborhood
MF GO:0051185 coenzyme transmembrane transporter activity IEP Neighborhood
MF GO:0071077 adenosine 3',5'-bisphosphate transmembrane transporter activity IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 135 198
IPR000504 RRM_dom 37 103
No external refs found!