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  5. AMTR_s00049p00216130

AMTR_s00049p00216130 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00049.249

Description : BTB/POZ domain-containing protein At1g67900 OS=Arabidopsis thaliana


Gene families : OG0000044 (Archaeplastida) Phylogenetic Tree(s): OG0000044_tree ,
OG_05_0000564 (LandPlants) Phylogenetic Tree(s): OG_05_0000564_tree ,
OG_06_0000455 (SeedPlants) Phylogenetic Tree(s): OG_06_0000455_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00049p00216130
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00155420 evm_27.TU.AmTr_v1... Root phototropism protein 3 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00057p00189750 evm_27.TU.AmTr_v1... BTB/POZ domain-containing protein At1g03010... 0.03 Archaeplastida
AMTR_s00077p00161250 evm_27.TU.AmTr_v1... Root phototropism protein 2 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01003773001 No alias BTB/POZ domain-containing protein At5g66560... 0.02 Archaeplastida
GSVIVT01006403001 No alias BTB/POZ domain-containing protein At3g22104... 0.02 Archaeplastida
GSVIVT01010983001 No alias BTB/POZ domain-containing protein At1g03010... 0.03 Archaeplastida
GSVIVT01024541001 No alias Root phototropism protein 2 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01030043001 No alias BTB/POZ domain-containing protein At5g48130... 0.02 Archaeplastida
LOC_Os03g22600.1 No alias BTB/POZ domain-containing protein At1g03010... 0.02 Archaeplastida
LOC_Os05g12030.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os11g02610.1 No alias Root phototropism protein 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_89781g0010 No alias BTB/POZ domain-containing protein At5g48130... 0.02 Archaeplastida
Pp3c3_37660V3.1 No alias Phototropic-responsive NPH3 family protein 0.02 Archaeplastida
Solyc01g105680.4.1 No alias component NPH3 of CUL3-BTB E3 ubiquitin ligase complex 0.02 Archaeplastida
Zm00001e006815_P001 No alias BTB/POZ domain-containing protein At5g03250... 0.01 Archaeplastida
Zm00001e009259_P001 No alias Root phototropism protein 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
CC GO:0005849 mRNA cleavage factor complex IEP Neighborhood
BP GO:0006378 mRNA polyadenylation IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
InterPro domains Description Start Stop
IPR027356 NPH3_dom 208 487
No external refs found!