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  5. Cre07.g348850

Cre07.g348850


Description : 50S ribosomal protein L2, chloroplastic OS=Chara vulgaris


Gene families : OG0000693 (Archaeplastida) Phylogenetic Tree(s): OG0000693_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre07.g348850
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00011090 evm_27.TU.AmTr_v1... 50S ribosomal protein L2, chloroplastic OS=Amborella trichopoda 0.01 Archaeplastida
ATCG00830 RPL2.1 ribosomal protein L2 0.04 Archaeplastida
ATCG01310 RPL2.2 ribosomal protein L2 0.04 Archaeplastida
Gb_17010 No alias component mtRPL2-C-terminal of large ribosomal subunit... 0.01 Archaeplastida
Mp1g19370.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c2_23491V3.1 No alias Ribosomal protein L2 family 0.05 Archaeplastida
Smo137825 No alias Protein biosynthesis.organelle translation... 0.02 Archaeplastida
Solyc00g500036.1.1 No alias 50S ribosomal protein L2, chloroplastic OS=Nicotiana... 0.01 Archaeplastida
Solyc00g500080.1.1 No alias 50S ribosomal protein L2, chloroplastic OS=Nicotiana... 0.01 Archaeplastida
Solyc00g500298.1.1 No alias 50S ribosomal protein L2, chloroplastic OS=Nicotiana... 0.01 Archaeplastida
Solyc10g018610.2.1 No alias No annotation 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000314 organellar small ribosomal subunit IEP Neighborhood
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
MF GO:0004177 aminopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005763 mitochondrial small ribosomal subunit IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
CC GO:0005856 cytoskeleton IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
MF GO:0008121 ubiquinol-cytochrome-c reductase activity IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
CC GO:0015935 small ribosomal subunit IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016681 oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor IEP Neighborhood
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
MF GO:0048038 quinone binding IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR022666 Rbsml_prot_L2_RNA-bd_dom 115 195
IPR022669 Ribosomal_L2_C 203 325
No external refs found!