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  5. Cre08.g364050

Cre08.g364050


Description : Chromatin organisation.chromatin remodeling complexes.additional core components.BAF255/170 component


Gene families : OG0000902 (Archaeplastida) Phylogenetic Tree(s): OG0000902_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre08.g364050
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00224780 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
AT4G34430 CHB3, ATSWI3D DNA-binding family protein 0.03 Archaeplastida
Cpa|evm.model.tig00000388.52 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
GSVIVT01031951001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Gb_20384 No alias component BAF255/170 of chromatin remodeling complex 0.02 Archaeplastida
LOC_Os02g10060.1 No alias component BAF255/170 of chromatin remodeling complex 0.02 Archaeplastida
LOC_Os04g40420.1 No alias component BAF255/170 of chromatin remodeling complex 0.03 Archaeplastida
LOC_Os11g08080.1 No alias component BAF255/170 of chromatin remodeling complex 0.02 Archaeplastida
LOC_Os12g07730.1 No alias component BAF255/170 of chromatin remodeling complex 0.03 Archaeplastida
MA_10432371g0010 No alias component BAF255/170 of chromatin remodeling complex 0.02 Archaeplastida
MA_10435735g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
Mp8g15610.1 No alias component BAF255/170 of chromatin remodeling complex 0.01 Archaeplastida
Pp3c16_6830V3.1 No alias DNA-binding family protein 0.01 Archaeplastida
Pp3c25_660V3.1 No alias SWITCH/sucrose nonfermenting 3C 0.02 Archaeplastida
Pp3c2_24980V3.1 No alias switch subunit 3 0.03 Archaeplastida
Solyc01g109510.3.1 No alias component BAF255/170 of chromatin remodeling complex 0.02 Archaeplastida
Solyc04g082760.3.1 No alias component BAF255/170 of chromatin remodeling complex 0.02 Archaeplastida
Solyc06g060120.3.1 No alias component BAF255/170 of chromatin remodeling complex 0.02 Archaeplastida
Zm00001e012143_P002 No alias component BAF255/170 of chromatin remodeling complex 0.01 Archaeplastida
Zm00001e018409_P001 No alias component BAF255/170 of chromatin remodeling complex 0.02 Archaeplastida
Zm00001e025044_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0035658 Mon1-Ccz1 complex IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044440 endosomal part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051253 negative regulation of RNA metabolic process IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR032451 SMARCC_C 741 818
IPR032450 SMARCC_N 17 258
IPR001005 SANT/Myb 323 364
No external refs found!