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  5. AT1G50980

AT1G50980


Description : F-box/RNI-like/FBD-like domains-containing protein


Gene families : OG0001094 (Archaeplastida) Phylogenetic Tree(s): OG0001094_tree ,
OG_05_0000663 (LandPlants) Phylogenetic Tree(s): OG_05_0000663_tree ,
OG_06_0000324 (SeedPlants) Phylogenetic Tree(s): OG_06_0000324_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G50980
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AT1G05080 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 Archaeplastida
AT1G51055 No alias FBD-like domain family protein 0.01 Archaeplastida
AT1G55030 No alias RNI-like superfamily protein 0.07 Archaeplastida
AT3G10750 No alias FBD domain family 0.06 Archaeplastida
AT3G49020 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.07 Archaeplastida
AT3G49030 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.07 Archaeplastida
AT3G49040 No alias F-box/RNI-like superfamily protein 0.07 Archaeplastida
AT3G49045 No alias No description available 0.05 Archaeplastida
AT3G50710 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 Archaeplastida
AT3G52690 No alias RNI-like superfamily protein 0.06 Archaeplastida
AT3G56780 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.05 Archaeplastida
AT4G00160 No alias F-box/RNI-like/FBD-like domains-containing protein 0.06 Archaeplastida
AT4G00315 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 Archaeplastida
AT4G13965 No alias Protein with RNI-like/FBD-like domains 0.05 Archaeplastida
AT4G26340 No alias F-box/RNI-like/FBD-like domains-containing protein 0.06 Archaeplastida
AT4G26350 No alias F-box/RNI-like/FBD-like domains-containing protein 0.06 Archaeplastida
AT5G38570 No alias F-box/RNI-like superfamily protein 0.04 Archaeplastida
AT5G38590 No alias F-box/RNI-like/FBD-like domains-containing protein 0.02 Archaeplastida
AT5G44850 No alias Protein with RNI-like/FBD-like domains 0.03 Archaeplastida
AT5G50270 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 Archaeplastida
AT5G56325 No alias FBD-like domain family protein 0.05 Archaeplastida
AT5G56370 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 Archaeplastida
AT5G56390 No alias F-box/RNI-like/FBD-like domains-containing protein 0.09 Archaeplastida
AT5G56400 No alias FBD, F-box, Skp2-like and Leucine Rich Repeat domains... 0.08 Archaeplastida
AT5G56420 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 Archaeplastida
AT5G56430 No alias F-box/FBD-like domains containing protein 0.08 Archaeplastida
AT5G56452 No alias FBD-like domain family protein 0.08 Archaeplastida
AT5G56560 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.07 Archaeplastida
AT5G56570 No alias Leucine-rich repeat (LRR) family protein 0.04 Archaeplastida
AT5G56700 No alias FBD / Leucine Rich Repeat domains containing protein 0.05 Archaeplastida
AT5G56810 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 Archaeplastida
AT5G56820 No alias F-box/RNI-like/FBD-like domains-containing protein 0.01 Archaeplastida
AT5G60610 No alias F-box/RNI-like superfamily protein 0.04 Archaeplastida
AT5G62970 No alias Protein with RNI-like/FBD-like domains 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0016020 membrane IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000156 phosphorelay response regulator activity IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003886 DNA (cytosine-5-)-methyltransferase activity IEP Neighborhood
MF GO:0004022 alcohol dehydrogenase (NAD) activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005200 structural constituent of cytoskeleton IEP Neighborhood
MF GO:0005544 calcium-dependent phospholipid binding IEP Neighborhood
MF GO:0009008 DNA-methyltransferase activity IEP Neighborhood
BP GO:0009736 cytokinin-activated signaling pathway IEP Neighborhood
MF GO:0009824 AMP dimethylallyltransferase activity IEP Neighborhood
BP GO:0010466 negative regulation of peptidase activity IEP Neighborhood
BP GO:0010951 negative regulation of endopeptidase activity IEP Neighborhood
CC GO:0019005 SCF ubiquitin ligase complex IEP Neighborhood
BP GO:0030162 regulation of proteolysis IEP Neighborhood
MF GO:0045551 cinnamyl-alcohol dehydrogenase activity IEP Neighborhood
BP GO:0045861 negative regulation of proteolysis IEP Neighborhood
BP GO:0051346 negative regulation of hydrolase activity IEP Neighborhood
BP GO:0052547 regulation of peptidase activity IEP Neighborhood
BP GO:0052548 regulation of endopeptidase activity IEP Neighborhood
MF GO:0052622 ATP dimethylallyltransferase activity IEP Neighborhood
MF GO:0052623 ADP dimethylallyltransferase activity IEP Neighborhood
BP GO:0060688 regulation of morphogenesis of a branching structure IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1900618 regulation of shoot system morphogenesis IEP Neighborhood
BP GO:1905428 regulation of plant organ formation IEP Neighborhood
MF GO:1990135 flavonoid sulfotransferase activity IEP Neighborhood
BP GO:2000032 regulation of secondary shoot formation IEP Neighborhood
InterPro domains Description Start Stop
IPR006566 FBD 297 341
IPR001810 F-box_dom 33 78
No external refs found!