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  5. Cre09.g400650

Cre09.g400650


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS6 component


Gene families : OG0002153 (Archaeplastida) Phylogenetic Tree(s): OG0002153_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre09.g400650
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00238890 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 Archaeplastida
AMTR_s00048p00058600 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
AMTR_s00077p00035710 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
AT4G31700 RPS6A, RPS6 ribosomal protein S6 0.21 Archaeplastida
AT5G10360 EMB3010, RPS6B Ribosomal protein S6e 0.26 Archaeplastida
Cpa|evm.model.tig00000704.73 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.2 Archaeplastida
GSVIVT01009072001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
LOC_Os03g27260.1 No alias component RPS6 of SSU proteome 0.17 Archaeplastida
LOC_Os07g42950.1 No alias component RPS6 of SSU proteome 0.23 Archaeplastida
MA_10426804g0010 No alias component RPS6 of SSU proteome 0.12 Archaeplastida
MA_72828g0010 No alias component RPS6 of SSU proteome 0.18 Archaeplastida
Mp4g01750.1 No alias component RPS6 of SSU proteome 0.25 Archaeplastida
Pp3c11_21120V3.1 No alias Ribosomal protein S6e 0.28 Archaeplastida
Pp3c15_25430V3.1 No alias Ribosomal protein S6e 0.15 Archaeplastida
Pp3c15_25780V3.1 No alias Ribosomal protein S6e 0.19 Archaeplastida
Pp3c15_25810V3.1 No alias ribosomal protein S6 0.02 Archaeplastida
Pp3c7_5780V3.1 No alias Ribosomal protein S6e 0.19 Archaeplastida
Smo172795 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.2 Archaeplastida
Solyc08g006040.3.1 No alias component RPS6 of SSU proteome 0.1 Archaeplastida
Solyc08g074240.3.1 No alias component RPS6 of SSU proteome 0.22 Archaeplastida
Solyc12g096300.2.1 No alias component RPS6 of SSU proteome 0.2 Archaeplastida
Zm00001e010802_P001 No alias component RPS6 of SSU proteome 0.19 Archaeplastida
Zm00001e035580_P002 No alias component RPS6 of SSU proteome 0.18 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
InterPro domains Description Start Stop
IPR001377 Ribosomal_S6e 1 128
No external refs found!