- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : RNA processing.RNA modification.rRNA/tRNA methylation.TRM1 tRNA guanosine-methyltransferase
Gene families : OG0003798 (Archaeplastida) Phylogenetic Tree(s): OG0003798_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre10.g422000 | |
| Cluster | HCCA: Cluster_22 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00021168.21 | No alias | RNA processing.RNA modification.rRNA/tRNA... | 0.12 | Archaeplastida | |
| GSVIVT01036556001 | No alias | RNA processing.RNA modification.rRNA/tRNA... | 0.05 | Archaeplastida | |
| Gb_38019 | No alias | Probable tRNA (guanine(26)-N(2))-dimethyltransferase 1... | 0.02 | Archaeplastida | |
| LOC_Os03g57280.1 | No alias | tRNA guanosine-methyltransferase (TRM1) | 0.05 | Archaeplastida | |
| MA_10428339g0010 | No alias | tRNA guanosine-methyltransferase (TRM1) | 0.03 | Archaeplastida | |
| MA_5280g0010 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| Mp1g00640.1 | No alias | tRNA guanosine-methyltransferase (TRM1) | 0.1 | Archaeplastida | |
| Pp3c16_12880V3.1 | No alias | N2,N2-dimethylguanosine tRNA methyltransferase | 0.04 | Archaeplastida | |
| Solyc02g089175.2.1 | No alias | tRNA guanosine-methyltransferase (TRM1) | 0.02 | Archaeplastida | |
| Zm00001e001206_P005 | No alias | tRNA guanosine-methyltransferase (TRM1) | 0.06 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEA | Interproscan |
| MF | GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity | IEA | Interproscan |
| BP | GO:0008033 | tRNA processing | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000213 | tRNA-intron endonuclease activity | IEP | Neighborhood |
| BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | Neighborhood |
| BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Neighborhood |
| BP | GO:0001510 | RNA methylation | IEP | Neighborhood |
| BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Neighborhood |
| MF | GO:0004521 | endoribonuclease activity | IEP | Neighborhood |
| MF | GO:0004549 | tRNA-specific ribonuclease activity | IEP | Neighborhood |
| MF | GO:0004749 | ribose phosphate diphosphokinase activity | IEP | Neighborhood |
| CC | GO:0005634 | nucleus | IEP | Neighborhood |
| CC | GO:0005730 | nucleolus | IEP | Neighborhood |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
| BP | GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | IEP | Neighborhood |
| BP | GO:0006400 | tRNA modification | IEP | Neighborhood |
| BP | GO:0009451 | RNA modification | IEP | Neighborhood |
| BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
| MF | GO:0016426 | tRNA (adenine) methyltransferase activity | IEP | Neighborhood |
| MF | GO:0016429 | tRNA (adenine-N1-)-methyltransferase activity | IEP | Neighborhood |
| MF | GO:0016778 | diphosphotransferase activity | IEP | Neighborhood |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Neighborhood |
| MF | GO:0016892 | endoribonuclease activity, producing 3'-phosphomonoesters | IEP | Neighborhood |
| MF | GO:0016894 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters | IEP | Neighborhood |
| MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Neighborhood |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
| BP | GO:0030488 | tRNA methylation | IEP | Neighborhood |
| BP | GO:0030490 | maturation of SSU-rRNA | IEP | Neighborhood |
| MF | GO:0030515 | snoRNA binding | IEP | Neighborhood |
| CC | GO:0030684 | preribosome | IEP | Neighborhood |
| CC | GO:0030688 | preribosome, small subunit precursor | IEP | Neighborhood |
| CC | GO:0031515 | tRNA (m1A) methyltransferase complex | IEP | Neighborhood |
| CC | GO:0032040 | small-subunit processome | IEP | Neighborhood |
| BP | GO:0032259 | methylation | IEP | Neighborhood |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Neighborhood |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Neighborhood |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Neighborhood |
| CC | GO:0034708 | methyltransferase complex | IEP | Neighborhood |
| BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0043414 | macromolecule methylation | IEP | Neighborhood |
| CC | GO:0043527 | tRNA methyltransferase complex | IEP | Neighborhood |
| BP | GO:0044085 | cellular component biogenesis | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Neighborhood |
| MF | GO:0097747 | RNA polymerase activity | IEP | Neighborhood |
| CC | GO:1990234 | transferase complex | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002905 | Trm1 | 36 | 444 |
| No external refs found! |